Mercurial > repos > rhpvorderman > shm_csr
changeset 1:281329c035ee draft
"planemo upload commit 51d73aa86a7fdb26c86d60fad3ea486f3629e26d"
| author | rhpvorderman |
|---|---|
| date | Fri, 05 Nov 2021 10:59:28 +0000 |
| parents | 64d74ba01a7c |
| children | 72d68e2e1fd3 |
| files | shm_csr.xml |
| diffstat | 1 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/shm_csr.xml Wed Oct 27 12:34:47 2021 +0000 +++ b/shm_csr.xml Fri Nov 05 10:59:28 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="shm_csr" name="SHM & CSR pipeline" version="1.2.1"> +<tool id="shm_csr" name="SHM & CSR pipeline" version="1.2.2"> <description>Performs a summary/analysis of an IMGT HighV-QUEST (https://www.imgt.org/HighV-QUEST/) ZIP file for Somatic hypermutation and class switch recombination.</description> <requirements> <requirement type="package" version="3.7.1">python</requirement> @@ -16,9 +16,7 @@ <requirement type="package" version="4.4.18">bash</requirement> <requirement type="package" version="1.34">tar</requirement> <requirement type="package" version="5.39">file</requirement> - <container type="docker">quay.io/rhpvorderman/mulled-v2-a2524529ff4c0254c944ff4606e926ca2e8b80d0:9fa3e7fda79c80bf1af596872bddd871913a2c1c-0</container> - <container type="singularity">docker://quay.io/rhpvorderman/mulled-v2-a2524529ff4c0254c944ff4606e926ca2e8b80d0:9fa3e7fda79c80bf1af596872bddd871913a2c1c-0</container> - </requirements> + </requirements> <command interpreter="bash"> #if str ( $filter_unique.filter_unique_select ) == "remove": wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast