# HG changeset patch # User rhpvorderman # Date 1636109968 0 # Node ID 281329c035eee99b8258e15bca44420fee15d057 # Parent 64d74ba01a7cbf527415126551d5ebc0612eb404 "planemo upload commit 51d73aa86a7fdb26c86d60fad3ea486f3629e26d" diff -r 64d74ba01a7c -r 281329c035ee shm_csr.xml --- a/shm_csr.xml Wed Oct 27 12:34:47 2021 +0000 +++ b/shm_csr.xml Fri Nov 05 10:59:28 2021 +0000 @@ -1,4 +1,4 @@ - + Performs a summary/analysis of an IMGT HighV-QUEST (https://www.imgt.org/HighV-QUEST/) ZIP file for Somatic hypermutation and class switch recombination. python @@ -16,9 +16,7 @@ bash tar file - quay.io/rhpvorderman/mulled-v2-a2524529ff4c0254c944ff4606e926ca2e8b80d0:9fa3e7fda79c80bf1af596872bddd871913a2c1c-0 - docker://quay.io/rhpvorderman/mulled-v2-a2524529ff4c0254c944ff4606e926ca2e8b80d0:9fa3e7fda79c80bf1af596872bddd871913a2c1c-0 - + #if str ( $filter_unique.filter_unique_select ) == "remove": wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast