Mercurial > repos > rhpvorderman > data_manager_select_index_by_path
changeset 7:462dc2bde908 draft
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit e60946896c8317d758f743afe866687f1513b9cf
| author | rhpvorderman |
|---|---|
| date | Mon, 11 Sep 2017 07:10:58 -0400 |
| parents | 1aac05452938 |
| children | 2fa5adc7f273 |
| files | data_manager/data_manager_select_index_by_path.xml data_manager/indexes.yml data_manager_conf.xml tool-data/gemini_databases.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 5 files changed, 0 insertions(+), 18 deletions(-) [+] |
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--- a/data_manager/data_manager_select_index_by_path.xml Mon Sep 11 07:00:01 2017 -0400 +++ b/data_manager/data_manager_select_index_by_path.xml Mon Sep 11 07:10:58 2017 -0400 @@ -23,7 +23,6 @@ <option value='bwameth_indexes'>bwameth_indexes</option> <option value='fasta_indexes'>fasta_indexes</option> <option value='gatk_picard_indexes'>gatk_picard_indexes</option> - <option value='gemini_databases'>gemini_databases</option> <option value='gene_transfer'>gene_transfer</option> <option value='hisat2_indexes'>hisat2_indexes</option> <option value='kallisto_indexes'>kallisto_indexes --no-prefix</option>
--- a/data_manager/indexes.yml Mon Sep 11 07:00:01 2017 -0400 +++ b/data_manager/indexes.yml Mon Sep 11 07:10:58 2017 -0400 @@ -30,8 +30,6 @@ - .fai gatk_picard_index: name: picard index for GATK -gemini_databases: - name: gemini database gene_transfer: name: Gene Transfer File extensions:
--- a/data_manager_conf.xml Mon Sep 11 07:00:01 2017 -0400 +++ b/data_manager_conf.xml Mon Sep 11 07:10:58 2017 -0400 @@ -65,14 +65,6 @@ <column name="path" /> </output> </data_table> - <data_table name="gemini_databases"> - <output> - <column name="value" /> - <column name="dbkey" /> - <column name="name" /> - <column name="path" /> - </output> - </data_table> <data_table name="gene_transfer"> <output> <column name="value" />
--- a/tool-data/gemini_databases.loc.sample Mon Sep 11 07:00:01 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -## GEMINI databases -#Version dbkey Description -#08_08_2014 hg19 Database (08-08-2014)
--- a/tool_data_table_conf.xml.sample Mon Sep 11 07:00:01 2017 -0400 +++ b/tool_data_table_conf.xml.sample Mon Sep 11 07:10:58 2017 -0400 @@ -32,10 +32,6 @@ <columns>value, dbkey, name, path</columns> <file path="tool-data/gatk_sorted_picard_index.loc" /> </table> - <table name="gemini_databases" comment_char="#" allow_duplicate_entries="False"> - <columns>value, dbkey, name, path</columns> - <file path="tool-data/gemini_databases.loc" /> - </table> <table name="gene_transfer" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/gene_transfer.loc" />