# HG changeset patch
# User rhpvorderman
# Date 1505128258 14400
# Node ID 462dc2bde908aa774a2ac48383ac3874e737c540
# Parent  1aac0545293816c5c1b07e9eec15d0cd9d07815e
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit e60946896c8317d758f743afe866687f1513b9cf

diff -r 1aac05452938 -r 462dc2bde908 data_manager/data_manager_select_index_by_path.xml
--- a/data_manager/data_manager_select_index_by_path.xml	Mon Sep 11 07:00:01 2017 -0400
+++ b/data_manager/data_manager_select_index_by_path.xml	Mon Sep 11 07:10:58 2017 -0400
@@ -23,7 +23,6 @@
           <option value='bwameth_indexes'>bwameth_indexes</option>
           <option value='fasta_indexes'>fasta_indexes</option>
           <option value='gatk_picard_indexes'>gatk_picard_indexes</option>
-          <option value='gemini_databases'>gemini_databases</option>
           <option value='gene_transfer'>gene_transfer</option>
           <option value='hisat2_indexes'>hisat2_indexes</option>
           <option value='kallisto_indexes'>kallisto_indexes --no-prefix</option>
diff -r 1aac05452938 -r 462dc2bde908 data_manager/indexes.yml
--- a/data_manager/indexes.yml	Mon Sep 11 07:00:01 2017 -0400
+++ b/data_manager/indexes.yml	Mon Sep 11 07:10:58 2017 -0400
@@ -30,8 +30,6 @@
     - .fai
 gatk_picard_index:
   name: picard index for GATK
-gemini_databases:
-  name: gemini database
 gene_transfer:
   name: Gene Transfer File
   extensions:
diff -r 1aac05452938 -r 462dc2bde908 data_manager_conf.xml
--- a/data_manager_conf.xml	Mon Sep 11 07:00:01 2017 -0400
+++ b/data_manager_conf.xml	Mon Sep 11 07:10:58 2017 -0400
@@ -65,14 +65,6 @@
                 <column name="path" />
             </output>
         </data_table>
-        <data_table name="gemini_databases">
-            <output>
-                <column name="value" />
-                <column name="dbkey" />
-                <column name="name" />
-                <column name="path" />
-            </output>
-        </data_table>
         <data_table name="gene_transfer">
             <output>
                 <column name="value" />
diff -r 1aac05452938 -r 462dc2bde908 tool-data/gemini_databases.loc.sample
--- a/tool-data/gemini_databases.loc.sample	Mon Sep 11 07:00:01 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-## GEMINI databases
-#Version	dbkey	Description
-#08_08_2014	hg19	Database (08-08-2014)
diff -r 1aac05452938 -r 462dc2bde908 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Mon Sep 11 07:00:01 2017 -0400
+++ b/tool_data_table_conf.xml.sample	Mon Sep 11 07:10:58 2017 -0400
@@ -32,10 +32,6 @@
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/gatk_sorted_picard_index.loc" />
     </table>
-    <table name="gemini_databases" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/gemini_databases.loc" />
-    </table>
     <table name="gene_transfer" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/gene_transfer.loc" />