Mercurial > repos > rhpvorderman > data_manager_mothur_toolsuite

annotate data_manager_conf.xml @ 1:3f8a5d7fe819 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 26f7f3ac0a25ad76b365231bcf8410330979691b"
author rhpvorderman
date Tue, 22 Jun 2021 13:27:29 +0000
parents 3f6f7ca5f95a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff changeset
1 <?xml version="1.0"?>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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2 <data_managers>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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3 <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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4 <data_table name="mothur_aligndb">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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5 <output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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6 <column name="name" />
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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7 <column name="value" output_ref="out_file" >
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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8 <move type="file">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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9 <source>${value}</source>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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11 </move>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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13 <value_translation type="function">abspath</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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14 </column>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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15 </output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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16 </data_table>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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17 <data_table name="mothur_lookup">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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18 <output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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19 <column name="name" />
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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20 <column name="value" output_ref="out_file" >
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff changeset
21 <move type="file">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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diff changeset
22 <source>${value}</source>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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23 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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24 </move>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff changeset
25 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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26 <value_translation type="function">abspath</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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27 </column>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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28 </output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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29 </data_table>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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30 <data_table name="mothur_map">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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31 <output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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32 <column name="name" />
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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33 <column name="value" output_ref="out_file" >
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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34 <move type="file">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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35 <source>${value}</source>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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36 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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37 </move>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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38 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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39 <value_translation type="function">abspath</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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40 </column>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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41 </output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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42 </data_table>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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43 <data_table name="mothur_taxonomy">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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44 <output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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45 <column name="name" />
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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46 <column name="value" output_ref="out_file" >
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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47 <move type="file">
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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48 <source>${value}</source>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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49 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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50 </move>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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51 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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52 <value_translation type="function">abspath</value_translation>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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53 </column>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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54 </output>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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55 </data_table>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
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56 </data_manager>
3f6f7ca5f95a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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57 </data_managers>