Mercurial > repos > rhpvorderman > data_manager_mothur_toolsuite

view data_manager_conf.xml @ 6:b17f2fb4a5cb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 6c115a41a535feff1e805d3d10f3a39940e5d738"
author rhpvorderman
date Tue, 29 Jun 2021 12:36:08 +0000
parents 3f6f7ca5f95a
children
line wrap: on
line source

<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data">
    <data_table name="mothur_aligndb">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_lookup">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_map">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_taxonomy">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
</data_managers>