Mercurial > repos > rhpvorderman > data_manager_mothur_toolsuite
diff data_manager_conf.xml @ 0:3f6f7ca5f95a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
| author | rhpvorderman |
|---|---|
| date | Tue, 22 Jun 2021 12:07:41 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Tue Jun 22 12:07:41 2021 +0000 @@ -0,0 +1,57 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data"> + <data_table name="mothur_aligndb"> + <output> + <column name="name" /> + <column name="value" output_ref="out_file" > + <move type="file"> + <source>${value}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="mothur_lookup"> + <output> + <column name="name" /> + <column name="value" output_ref="out_file" > + <move type="file"> + <source>${value}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="mothur_map"> + <output> + <column name="name" /> + <column name="value" output_ref="out_file" > + <move type="file"> + <source>${value}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="mothur_taxonomy"> + <output> + <column name="name" /> + <column name="value" output_ref="out_file" > + <move type="file"> + <source>${value}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>