changeset 6:50ec949cfdce draft

planemo upload for repository https://github.com/scottx611x/picard_MergeSamFiles commit 2137a21daebbb1cf755e8bf99fae7f5a77b07f87-dirty

--- a/tool_dependencies.xml	Mon Dec 04 10:23:11 2017 -0500
+++ b/tool_dependencies.xml	Mon Dec 04 10:43:42 2017 -0500
@@ -1,6 +1,22 @@
 <?xml version="1.0"?>
- <tool_dependency>
-     <package name="picard" version="1.56.0">
-         <repository changeset_revision="7206dbf34dcd" name="package_picard_1_56_0" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-     </package>
- </tool_dependency>
\ No newline at end of file
+<tool_dependency>
+    <package name="picard" version="1.126.0">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.126/picard-tools-1.126.zip</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
+        </readme>
+    </package>
+</tool_dependency>
\ No newline at end of file