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view tool_dependencies.xml @ 6:50ec949cfdce draft

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planemo upload for repository https://github.com/scottx611x/picard_MergeSamFiles commit 2137a21daebbb1cf755e8bf99fae7f5a77b07f87-dirty
author refinery-platform
date Mon, 04 Dec 2017 10:43:42 -0500
parents a01e30f7777f
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<?xml version="1.0"?>
<tool_dependency>
    <package name="picard" version="1.126.0">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.126/picard-tools-1.126.zip</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>       
                </actions>                
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
        </readme>
    </package>
</tool_dependency>