Mercurial > repos > refinery-platform > picard_merge_sam_files

changeset 4:2c6b2c6ee3bb draft

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planemo upload for repository https://github.com/scottx611x/picard_MergeSamFiles commit 2137a21daebbb1cf755e8bf99fae7f5a77b07f87-dirty
author refinery-platform
date Mon, 04 Dec 2017 10:16:33 -0500
parents a01e30f7777f
children 4a06ecf77f92
files picard_MergeSamFiles.xml
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/picard_MergeSamFiles.xml	Mon Dec 04 10:11:59 2017 -0500
+++ b/picard_MergeSamFiles.xml	Mon Dec 04 10:16:33 2017 -0500
@@ -3,12 +3,11 @@
   <macros>
     <import>picard_macros.xml</import>
   </macros>
-  <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
     @java_options@
     #for $index, $listCollection in enumerate($inputList):
       && 
-      picard
+      java -jar \$JAVA_JAR_PATH/picard.jar 
       MergeSamFiles
 
       #for $element in $listCollection: