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annotate assign_clades.xml @ 0:17e07e34b497 draft

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planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
author public-health-bioinformatics
date Wed, 09 Jan 2019 15:02:15 -0500
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children c20ba006a8ad
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17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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1 <tool id="assign_clades" name="Assign Clades" version="0.0.1">
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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2 <requirements>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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3 <requirement type="package" version="1.7.0">biopython</requirement>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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4 </requirements>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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5 <command detect_errors="exit_code"><![CDATA[
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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6 assign_clades.py
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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7 '$input_fasta'
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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8 '$clade_definitions'
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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9 '$output_file'
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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10 ]]></command>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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11 <inputs>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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12 <param name="input_fasta" format="fasta" type="data" />
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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13 <param name="clade_definitions" format="csv" type="data" />
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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14 </inputs>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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15 <outputs>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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16 <data name="output_file" format="fasta"/>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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17 </outputs>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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18 <tests>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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19 <test>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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20 <param name="input_fasta" value="input_fasta.fasta" />
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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21 <param name="clade_definitions" value="clades.csv" />
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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22 <output name="output_file" value="output.fasta" />
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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23 </test>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
public-health-bioinformatics
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24 </tests>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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25 <help><![CDATA[
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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26 ]]></help>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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27 <citations>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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28 </citations>
17e07e34b497 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
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29 </tool>