Mercurial > repos > public-health-bioinformatics > flu_classification_suite

diff assign_clades.xml @ 0:17e07e34b497 draft

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planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 561cde8c8bd4a6164b1bef19ecff9809ac3340e0-dirty
author public-health-bioinformatics
date Wed, 09 Jan 2019 15:02:15 -0500
parents
children c20ba006a8ad
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/assign_clades.xml	Wed Jan 09 15:02:15 2019 -0500
@@ -0,0 +1,29 @@
+<tool id="assign_clades" name="Assign Clades" version="0.0.1">
+  <requirements>
+    <requirement type="package" version="1.7.0">biopython</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    assign_clades.py
+    '$input_fasta'
+    '$clade_definitions'
+    '$output_file'
+  ]]></command>
+  <inputs>
+    <param name="input_fasta" format="fasta" type="data" />
+    <param name="clade_definitions" format="csv" type="data" />
+  </inputs>
+  <outputs>
+    <data name="output_file" format="fasta"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input_fasta" value="input_fasta.fasta" />
+      <param name="clade_definitions" value="clades.csv" />
+      <output name="output_file" value="output.fasta" />
+    </test>
+  </tests>
+  <help><![CDATA[
+  ]]></help>
+  <citations>
+  </citations>
+</tool>