Mercurial > repos > pjbriggs > trimmomatic
view trimmomatic_macros.xml @ 18:9b273be64c25 draft default tip
Updated for Trimmomatic 0.39
author | pjbriggs |
---|---|
date | Thu, 02 Mar 2023 14:48:18 +0000 |
parents | d300b1888cef |
children |
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<macros> <!-- Set the path for the trimmomatic JAR and data files Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13 --> <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token> <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token> <token name="@TOOL_VERSION@">0.39</token> <token name="@VERSION_SUFFIX@">0</token> </macros>