Mercurial > repos > pjbriggs > trimmomatic
view trimmomatic_macros.xml @ 16:d300b1888cef draft
Uploaded bugfix version 0.38.1 for testing
author | pjbriggs |
---|---|
date | Wed, 25 Mar 2020 14:43:33 +0000 |
parents | 4fe90ae30670 |
children | 9b273be64c25 |
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<macros> <!-- Set the path for the trimmomatic JAR and data files Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13 --> <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token> <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token> </macros>