Mercurial > repos > pjbriggs > pal_finder
changeset 11:84613d5f1713 draft
Uploaded fix to printing read IDs with associated with 'bad' ranges.
| author | pjbriggs |
|---|---|
| date | Mon, 24 Jul 2017 11:04:27 -0400 |
| parents | e95e2b7b3c84 |
| children | d26fb5260c67 |
| files | pal_finder_wrapper.sh pal_finder_wrapper.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/pal_finder_wrapper.sh Fri Jun 16 09:30:37 2017 -0400 +++ b/pal_finder_wrapper.sh Mon Jul 24 11:04:27 2017 -0400 @@ -320,7 +320,7 @@ Pal_finder generated bad ranges for the following read IDs: EOF - $(find_bad_primer_ranges Output/pr3in.txt) >&2 + echo $(find_bad_primer_ranges Output/pr3in.txt) >&2 cat >&2 <<EOF This error can occur when input data contains short R1 reads and has
--- a/pal_finder_wrapper.xml Fri Jun 16 09:30:37 2017 -0400 +++ b/pal_finder_wrapper.xml Mon Jul 24 11:04:27 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="microsat_pal_finder" name="pal_finder" version="0.02.04.5"> +<tool id="microsat_pal_finder" name="pal_finder" version="0.02.04.6"> <description>Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them</description> <requirements> <requirement type="package" version="5.16.3">perl</requirement>