Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
changeset 16:4bd582d23d4e draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit af3afa7bd2c2441074879938cd93d9965908bbc7-dirty
| author | pjbriggs |
|---|---|
| date | Tue, 03 Jul 2018 07:15:37 -0400 |
| parents | 07b04a63abf1 |
| children | e1ba19551395 |
| files | amplicon_analysis_pipeline.py |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/amplicon_analysis_pipeline.py Tue Jul 03 07:09:34 2018 -0400 +++ b/amplicon_analysis_pipeline.py Tue Jul 03 07:15:37 2018 -0400 @@ -199,14 +199,14 @@ # biconda provides this in the 'share/rdp_classifier/' dir rdp_classifier = find_executable("rdp_classifier") if rdp_classifier: - rdp_classifer = os.path.normpath( - os.path.join(os.path.dirname(rdp_classifer), + rdp_classifier = os.path.normpath( + os.path.join(os.path.dirname(rdp_classifier), "..", "share", "rdp_classifier", "rdp_classifier.jar")) if rdp_classifier and os.path.exists(os.path.join): - os.environ["RDP_JAR_PATH"] = rdp_classifer + os.environ["RDP_JAR_PATH"] = rdp_classifier print "-- set RDP_JAR_PATH: %s" % os.environ["RDP_JAR_PATH"] else: sys.stderr.write("Missing 'rdp_classifier.jar'\n")