# HG changeset patch
# User pjbriggs
# Date 1530616537 14400
# Node ID 4bd582d23d4e2acd3f85b553ee0d06270443bda9
# Parent  07b04a63abf138f7913dc9eb1dbd1fdc89672af3
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit af3afa7bd2c2441074879938cd93d9965908bbc7-dirty

diff -r 07b04a63abf1 -r 4bd582d23d4e amplicon_analysis_pipeline.py
--- a/amplicon_analysis_pipeline.py	Tue Jul 03 07:09:34 2018 -0400
+++ b/amplicon_analysis_pipeline.py	Tue Jul 03 07:15:37 2018 -0400
@@ -199,14 +199,14 @@
     # biconda provides this in the 'share/rdp_classifier/' dir
     rdp_classifier = find_executable("rdp_classifier")
     if rdp_classifier:
-        rdp_classifer = os.path.normpath(
-            os.path.join(os.path.dirname(rdp_classifer),
+        rdp_classifier = os.path.normpath(
+            os.path.join(os.path.dirname(rdp_classifier),
                          "..",
                          "share",
                          "rdp_classifier",
                          "rdp_classifier.jar"))
     if rdp_classifier and os.path.exists(os.path.join):
-        os.environ["RDP_JAR_PATH"] = rdp_classifer
+        os.environ["RDP_JAR_PATH"] = rdp_classifier
         print "-- set RDP_JAR_PATH: %s" % os.environ["RDP_JAR_PATH"]
     else:
         sys.stderr.write("Missing 'rdp_classifier.jar'\n")