Mercurial > repos > pitagora > pitagora_workflows

changeset 4:d89d9be580c9

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commit
author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Mon, 02 Mar 2015 20:09:10 +0900
parents b7c412dbb437
children bae7b4545613
files Galaxy-Workflow-ChIP-seq_02.ga
diffstat 1 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/Galaxy-Workflow-ChIP-seq_02.ga	Mon Mar 02 19:58:50 2015 +0900
+++ b/Galaxy-Workflow-ChIP-seq_02.ga	Mon Mar 02 20:09:10 2015 +0900
@@ -88,7 +88,12 @@
                     "output_name": "output"
                 }
             }, 
-            "inputs": [], 
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Bowtie2", 
+                    "name": "reference_genome"
+                }
+            ], 
             "label": null, 
             "name": "Bowtie2", 
             "outputs": [
@@ -112,7 +117,7 @@
             "post_job_actions": {}, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.3", 
-            "tool_state": "{\"__page__\": 0, \"read_group\": \"{\\\"__current_case__\\\": 1, \\\"read_group_selector\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"unaligned_file\\\": \\\"False\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": null}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"simple\\\", \\\"presets\\\": \\\"no_presets\\\", \\\"__current_case__\\\": 0}\"}", 
+            "tool_state": "{\"__page__\": 0, \"read_group\": \"{\\\"__current_case__\\\": 1, \\\"read_group_selector\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"unaligned_file\\\": \\\"False\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"simple\\\", \\\"presets\\\": \\\"no_presets\\\", \\\"__current_case__\\\": 0}\"}", 
             "tool_version": "0.3", 
             "type": "tool", 
             "user_outputs": [], 
@@ -403,5 +408,5 @@
             "uuid": "ceaa26fd-e68c-4d27-9cb3-3d051989b022"
         }
     }, 
-    "uuid": "df647667-d3ad-4e4b-9016-ba65756118ba"
+    "uuid": "f233a2d3-22ff-474d-81ce-83319b33341a"
 }
\ No newline at end of file