Mercurial > repos > pitagora > pitagora_workflows

changeset 3:b7c412dbb437

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commit
author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Mon, 02 Mar 2015 19:58:50 +0900
parents 765381b3f4a1
children d89d9be580c9
files Galaxy-Workflow-ChIP-seq_02.ga
diffstat 1 files changed, 65 insertions(+), 40 deletions(-) [+]
line wrap: on
line diff
--- a/Galaxy-Workflow-ChIP-seq_02.ga	Sat Feb 28 18:33:07 2015 +0900
+++ b/Galaxy-Workflow-ChIP-seq_02.ga	Mon Mar 02 19:58:50 2015 +0900
@@ -14,18 +14,20 @@
                     "name": "FASTQ File"
                 }
             ], 
+            "label": null, 
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
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-                "top": 176.265625
+                "left": 175.703125, 
+                "top": 200
             }, 
             "tool_errors": null, 
             "tool_id": null, 
             "tool_state": "{\"name\": \"FASTQ File\"}", 
             "tool_version": null, 
             "type": "data_input", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "11c9810e-e6d3-4d6d-bb4b-b448efcadc34"
         }, 
         "1": {
             "annotation": "", 
@@ -37,18 +39,20 @@
                     "name": "Gene List File"
                 }
             ], 
+            "label": null, 
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 353.984375, 
-                "top": 562.28125
+                "left": 311.6875, 
+                "top": 663.015625
             }, 
             "tool_errors": null, 
             "tool_id": null, 
             "tool_state": "{\"name\": \"Gene List File\"}", 
             "tool_version": null, 
             "type": "data_input", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "1640d1a5-a4ec-4750-a263-aef66976d4eb"
         }, 
         "2": {
             "annotation": "", 
@@ -60,18 +64,20 @@
                     "name": "Gene ID x Name Table"
                 }
             ], 
+            "label": null, 
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 1058.96875, 
-                "top": 585.65625
+                "left": 1016.671875, 
+                "top": 686.390625
             }, 
             "tool_errors": null, 
             "tool_id": null, 
             "tool_state": "{\"name\": \"Gene ID x Name Table\"}", 
             "tool_version": null, 
             "type": "data_input", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "c35c6fbd-0408-4a57-a96d-876b7c34f4ef"
         }, 
         "3": {
             "annotation": "", 
@@ -83,6 +89,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "Bowtie2", 
             "outputs": [
                 {
@@ -99,16 +106,17 @@
                 }
             ], 
             "position": {
-                "left": 234.296875, 
-                "top": 268
+                "left": 211, 
+                "top": 338.734375
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             "post_job_actions": {}, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.2", 
-            "tool_state": "{\"__page__\": 0, \"read_group\": \"{\\\"selection\\\": \\\"no\\\", \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"unaligned_file\": \"\\\"False\\\"\", \"library\": \"{\\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": null}\", \"params\": \"{\\\"full\\\": \\\"no\\\", \\\"__current_case__\\\": 1}\"}", 
-            "tool_version": "0.2", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.3", 
+            "tool_state": "{\"__page__\": 0, \"read_group\": \"{\\\"__current_case__\\\": 1, \\\"read_group_selector\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"unaligned_file\\\": \\\"False\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": null}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"simple\\\", \\\"presets\\\": \\\"no_presets\\\", \\\"__current_case__\\\": 0}\"}", 
+            "tool_version": "0.3", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "8a1d5ec3-8c98-4e3b-beea-db7802ea6da4"
         }, 
         "4": {
             "annotation": "", 
@@ -120,6 +128,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "awk", 
             "outputs": [
                 {
@@ -128,8 +137,8 @@
                 }
             ], 
             "position": {
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-                "top": 547.40625
+                "left": 524.8125, 
+                "top": 648.140625
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             "post_job_actions": {}, 
             "tool_errors": null, 
@@ -137,7 +146,8 @@
             "tool_state": "{\"__page__\": 0, \"FS\": \"\\\"tab\\\"\", \"file_data\": \"\\\"{\\\\nif($6==\\\\\\\"+\\\\\\\"){print $1,$2-1000,$2+1000,$4,$5,$6}\\\\nelse if($6==\\\\\\\"-\\\\\\\"){print $1,$3-1000,$3+1000,$4,$5,$6}\\\\n}\\\"\", \"__rerun_remap_job_id__\": null, \"OFS\": \"\\\"tab\\\"\", \"input\": \"null\"}", 
             "tool_version": "0.0.1", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "e54b677e-4679-4362-964d-2831e7d75fda"
         }, 
         "5": {
             "annotation": "", 
@@ -149,6 +159,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "MACS", 
             "outputs": [
                 {
@@ -177,8 +188,8 @@
                 }
             ], 
             "position": {
-                "left": 566.046875, 
-                "top": 227.328125
+                "left": 523.75, 
+                "top": 328.0625
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             "post_job_actions": {}, 
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@@ -186,7 +197,8 @@
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             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "e3bdc72f-7851-435e-a511-a15d60a260fb"
         }, 
         "6": {
             "annotation": "", 
@@ -198,6 +210,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "awk", 
             "outputs": [
                 {
@@ -206,8 +219,8 @@
                 }
             ], 
             "position": {
-                "left": 877.15625, 
-                "top": 289.4375
+                "left": 834.859375, 
+                "top": 390.171875
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             "post_job_actions": {}, 
             "tool_errors": null, 
@@ -215,7 +228,8 @@
             "tool_state": "{\"__page__\": 0, \"FS\": \"\\\"tab\\\"\", \"file_data\": \"\\\"{if (NR>1) {print $1,$2,$3,$4,$5;} }\\\"\", \"__rerun_remap_job_id__\": null, \"OFS\": \"\\\"tab\\\"\", \"input\": \"null\"}", 
             "tool_version": "0.0.1", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "3549ea66-5f1b-40c7-a434-3ec21aa52be5"
         }, 
         "7": {
             "annotation": "", 
@@ -231,6 +245,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "Join", 
             "outputs": [
                 {
@@ -239,8 +254,8 @@
                 }
             ], 
             "position": {
-                "left": 1097.875, 
-                "top": 353.5625
+                "left": 1055.578125, 
+                "top": 454.296875
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             "post_job_actions": {}, 
             "tool_errors": null, 
@@ -248,7 +263,8 @@
             "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"fill\": \"\\\"none\\\"\"}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "9a18bec3-60f0-41a7-b010-5309de4d421d"
         }, 
         "8": {
             "annotation": "", 
@@ -264,6 +280,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "Join two Datasets", 
             "outputs": [
                 {
@@ -272,8 +289,8 @@
                 }
             ], 
             "position": {
-                "left": 1375.9375, 
-                "top": 434.640625
+                "left": 1333.640625, 
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@@ -281,7 +298,8 @@
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             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "75f8ece5-c2c2-464c-95c9-279e2afb22e7"
         }, 
         "9": {
             "annotation": "", 
@@ -293,6 +311,7 @@
                 }
             }, 
             "inputs": [], 
+            "label": null, 
             "name": "Count", 
             "outputs": [
                 {
@@ -301,8 +320,8 @@
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             ], 
             "position": {
-                "left": 1589.03125, 
-                "top": 444.703125
+                "left": 1546.734375, 
+                "top": 545.4375
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             "tool_errors": null, 
@@ -310,7 +329,8 @@
             "tool_state": "{\"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"17\\\"]}\", \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"delim\": \"\\\"T\\\"\", \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "6c8feac1-3b1c-4884-9d11-d20bd44627d2"
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         "10": {
             "annotation": "", 
@@ -322,6 +342,7 @@
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             "inputs": [], 
+            "label": null, 
             "name": "sed", 
             "outputs": [
                 {
@@ -330,8 +351,8 @@
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             ], 
             "position": {
-                "left": 1601.828125, 
-                "top": 608.53125
+                "left": 1559.53125, 
+                "top": 709.265625
             }, 
             "post_job_actions": {
                 "ChangeDatatypeActionoutput": {
@@ -347,7 +368,8 @@
             "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"silent\": \"\\\"\\\"\", \"url_paste\": \"\\\"s/\\\\\\\\t/,/g\\\"\", \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "26be57e1-20e2-4561-81e3-c7fd6a0d5fe7"
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         "11": {
             "annotation": "", 
@@ -359,6 +381,7 @@
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             "inputs": [], 
+            "label": null, 
             "name": "Cut", 
             "outputs": [
                 {
@@ -367,8 +390,8 @@
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             "position": {
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-                "top": 472.75
+                "left": 1753.765625, 
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@@ -376,7 +399,9 @@
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             "tool_version": "1.0.2", 
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-            "user_outputs": []
+            "user_outputs": [], 
+            "uuid": "ceaa26fd-e68c-4d27-9cb3-3d051989b022"
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-    }
+    }, 
+    "uuid": "df647667-d3ad-4e4b-9016-ba65756118ba"
 }
\ No newline at end of file