Mercurial > repos > pimarin > data_manager_bakta
changeset 14:bcac3aa1f494 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit b082e89a0090f9c4b2a257bb06b7c6f141b42650-dirty
author | pimarin |
---|---|
date | Wed, 02 Nov 2022 16:14:09 +0000 |
parents | 8f63e424da2b |
children | ac4d5e1d1421 |
files | data_manager/bakta_build_database.py data_manager/macro.xml data_manager_conf.xml |
diffstat | 3 files changed, 4 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/data_manager/bakta_build_database.py Wed Nov 02 15:39:46 2022 +0000 +++ b/data_manager/bakta_build_database.py Wed Nov 02 16:14:09 2022 +0000 @@ -11,7 +11,6 @@ import requests from alive_progress import alive_bar - class GetBaktaDatabaseInfo: """ Extract bakta database information to make a json file for data_manager
--- a/data_manager/macro.xml Wed Nov 02 15:39:46 2022 +0000 +++ b/data_manager/macro.xml Wed Nov 02 16:14:09 2022 +0000 @@ -1,11 +1,13 @@ <macros> <token name="@TOOL_VERSION@">1.5.1</token> <token name="@PYTHON_VERSION@">3.8</token> + <token name="@REQUESTS_VERSION@">2.28.1</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.05</token> <xml name="requirements"> <requirements> <requirement type="package" version="@PYTHON_VERSION@">python</requirement> + <requirement type="package" version="@REQUEST_VERSION@">requests</requirement> </requirements> </xml> </macros>
--- a/data_manager_conf.xml Wed Nov 02 15:39:46 2022 +0000 +++ b/data_manager_conf.xml Wed Nov 02 16:14:09 2022 +0000 @@ -8,11 +8,11 @@ <column name="bakta_version"/> <column name="path" output_ref="output_file"> <move type="directory" relativize_symlinks="True"> - <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> + <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bakta_database/${dbkey}/${path}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bakta_database/${dbkey}/${path}</value_translation> - <!-- <value_translation type="function">abspath</value_translation> --> + <value_translation type="function">abspath</value_translation> </column> </output> </data_table>