Mercurial > repos > pimarin > data_manager_bakta
changeset 15:ac4d5e1d1421 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit b082e89a0090f9c4b2a257bb06b7c6f141b42650-dirty
| author | pimarin |
|---|---|
| date | Wed, 02 Nov 2022 16:21:11 +0000 |
| parents | bcac3aa1f494 |
| children | 718080c30a76 |
| files | data_manager/bakta_build_database.py |
| diffstat | 1 files changed, 4 insertions(+), 11 deletions(-) [+] |
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--- a/data_manager/bakta_build_database.py Wed Nov 02 16:14:09 2022 +0000 +++ b/data_manager/bakta_build_database.py Wed Nov 02 16:21:11 2022 +0000 @@ -9,8 +9,6 @@ from pathlib import Path import requests -from alive_progress import alive_bar - class GetBaktaDatabaseInfo: """ Extract bakta database information to make a json file for data_manager @@ -138,16 +136,11 @@ requests.get(self.db_url, stream=True) as resp: total_length = resp.headers.get('content-length') if total_length is None: # no content length header - with alive_bar() as bar: - for data in resp.iter_content(chunk_size=1024 * 1024): - fh_out.write(data) - bar() + for data in resp.iter_content(chunk_size=1024 * 1024): + fh_out.write(data) else: - total_length = int(int(total_length) / 1024) - with alive_bar(total=total_length) as bar: - for data in resp.iter_content(chunk_size=1024 * 1024): - fh_out.write(data) - bar(incr=len(data) / 1024) + for data in resp.iter_content(chunk_size=1024 * 1024): + fh_out.write(data) print(f'Download bakta database {self.db_version}') self.tarball_path = bakta_path except IOError: