Mercurial > repos > pieterlukasse > prims_proteomics

changeset 22:fa1eef8595dc

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fixex/improvements
author pieter.lukasse@wur.nl
date Thu, 02 Jan 2014 14:18:30 +0100
parents 8cc1f1e01232
children 03e49edb0e90
files Csv2Apml.jar MsFilt.jar NapQ.jar PRIMS.jar ProgenesisConv.jar Quantifere.jar Quantiline.jar README.rst SedMat_cli.jar prims_proteomics_datatypes.py
diffstat 10 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
Binary file Csv2Apml.jar has changed
Binary file MsFilt.jar has changed
Binary file NapQ.jar has changed
Binary file PRIMS.jar has changed
Binary file ProgenesisConv.jar has changed
Binary file Quantifere.jar has changed
Binary file Quantiline.jar has changed
--- a/README.rst	Thu Jan 02 11:17:21 2014 +0100
+++ b/README.rst	Thu Jan 02 14:18:30 2014 +0100
@@ -6,7 +6,7 @@
 protein inference for labeled and label-free Mass Spectrometry proteomics data. 
 
 Can be used in combination with PRIMS-MASSCOMB (prims_masscomb package) and
-with PRIMV-visualizations (primv_visualizations package).
+with PRIMV-visualization (primv_visualization package).
 
 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), 
 Wageningen, The Netherlands. All rights reserved. See the license text below.
@@ -20,9 +20,9 @@
 ============== ======================================================================
 Date            Changes
 -------------- ----------------------------------------------------------------------
-January 2014   -first release via Tool Shed
-November 2013  -multiple tools used internally at PRI 
-end 2011       -first tool
+January 2014   * first release via Tool Shed
+November 2013  * multiple tools used internally at PRI 
+end 2011       * first tool
 ============== ======================================================================
 
 Tool Versioning
Binary file SedMat_cli.jar has changed
--- a/prims_proteomics_datatypes.py	Thu Jan 02 11:17:21 2014 +0100
+++ b/prims_proteomics_datatypes.py	Thu Jan 02 14:18:30 2014 +0100
@@ -37,6 +37,6 @@
 
 class Apml( ProteomicsXml ):
     """APML data"""
-    file_ext = "pepxml"
+    file_ext = "apml"
     blurb = 'PRIMS APML proteomics data'
     root = "apml"
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