Mercurial > repos > pieterlukasse > prims_proteomics
changeset 21:8cc1f1e01232
fixed fileset file type
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 02 Jan 2014 11:17:21 +0100 |
| parents | 7f32cebfdf85 |
| children | fa1eef8595dc |
| files | msfilt.xml napq.xml quantiline.xml sedmat.xml |
| diffstat | 4 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/msfilt.xml Tue Dec 31 12:39:29 2013 +0100 +++ b/msfilt.xml Thu Jan 02 11:17:21 2014 +0100 @@ -37,8 +37,8 @@ SEDMAT or Quantiline tools." /> <repeat name="annotationSourceFiles" title="(Optional) Peptide identification files" help="Full set of MS/MS peptide identification files, including peptides that could not be quantified."> - <param name="identificationsFile" type="data" format="apml,mzidentml,mscfileset" label="Identifications file (APML or MZIDENTML or MZIDENTML fileSet)" /> - <param name="spectraFile" type="data" format="mzidentml,mscfileset" optional="true" label="(Optional) Spectra fileSet (mzml file or fileSet)" + <param name="identificationsFile" type="data" format="apml,mzidentml,prims.fileset.zip" label="Identifications file (APML or MZIDENTML or MZIDENTML fileSet)" /> + <param name="spectraFile" type="data" format="mzidentml,prims.fileset.zip" optional="true" label="(Optional) Spectra fileSet (mzml file or fileSet)" help="Select this in case your Identifications file is MZIDENTML or MZIDENTML fileSet" /> </repeat>
--- a/napq.xml Tue Dec 31 12:39:29 2013 +0100 +++ b/napq.xml Thu Jan 02 11:17:21 2014 +0100 @@ -21,8 +21,8 @@ <inputs> <repeat name="identificationFileList" title="Peptide identification files" help="Full set of MS/MS peptide identification files, including peptides that could not be quantified."> - <param name="identificationsFile" type="data" format="apml,mzidentml,mscfileset" label="Identifications file (APML or MZIDENTML or MZIDENTML fileSet)" /> - <param name="spectraFile" type="data" format="mzidentml,mscfileset" optional="true" label="(Optional) Spectra fileSet (mzml file or fileSet)" + <param name="identificationsFile" type="data" format="apml,mzidentml,prims.fileset.zip" label="Identifications file (APML or MZIDENTML or MZIDENTML fileSet)" /> + <param name="spectraFile" type="data" format="mzidentml,prims.fileset.zip" optional="true" label="(Optional) Spectra fileSet (mzml file or fileSet)" help="Select this in case your Identifications file is MZIDENTML or MZIDENTML fileSet" /> </repeat>
--- a/quantiline.xml Tue Dec 31 12:39:29 2013 +0100 +++ b/quantiline.xml Thu Jan 02 11:17:21 2014 +0100 @@ -17,8 +17,8 @@ </command> <inputs> - <param name="ppidsFileName" type="data" format="mscfileset" label="MS/MS peptide identifications fileSet (N mzidentml files)"/> - <param name="spectraDataFile" type="data" format="mscfileset" label="MS/MS spectra fileSet (N mzml files)"/> + <param name="ppidsFileName" type="data" format="prims.fileset.zip" label="MS/MS peptide identifications fileSet (N mzidentml files)"/> + <param name="spectraDataFile" type="data" format="prims.fileset.zip" label="MS/MS spectra fileSet (N mzml files)"/> <param name="labelMzValues" type="text" size="20" label="Label m/z values" help="e.g. for 4plexed iTRAQ : 114.0,115.0,116.0,117.0"/>
--- a/sedmat.xml Tue Dec 31 12:39:29 2013 +0100 +++ b/sedmat.xml Thu Jan 02 11:17:21 2014 +0100 @@ -73,8 +73,8 @@ <option value="mzid" selected="true">mzIdentML on mzML</option> </param> <when value="mzid"> - <param name="spectraDataFile" type="data" format="mscfileset" label="MS/MS spectra fileSet (N mzml files)"/> - <param name="ppidsFile" type="data" format="mscfileset" label="MS/MS peptide identifications fileSet (N mzidentml files)"/> + <param name="spectraDataFile" type="data" format="prims.fileset.zip" label="MS/MS spectra fileSet (N mzml files)"/> + <param name="ppidsFile" type="data" format="prims.fileset.zip" label="MS/MS peptide identifications fileSet (N mzidentml files)"/> </when> </conditional> </when>