Mercurial > repos > peterjc > seq_rename
changeset 14:61cec46f6be5 draft
Uploaded v0.0.5, corrected automated dependency definition
| author | peterjc |
|---|---|
| date | Wed, 20 Nov 2013 12:11:32 -0500 |
| parents | d08767ae73ce |
| children | ba3ec1b3e635 |
| files | tools/seq_rename/README.rst tools/seq_rename/repository_dependencies.xml tools/seq_rename/tool_dependencies.xml |
| diffstat | 3 files changed, 9 insertions(+), 8 deletions(-) [+] |
line wrap: on
line diff
--- a/tools/seq_rename/README.rst Fri Sep 27 06:10:29 2013 -0400 +++ b/tools/seq_rename/README.rst Wed Nov 20 12:11:32 2013 -0500 @@ -70,6 +70,7 @@ - Updated citation information (Cock et al. 2013). - Development moved to GitHub, https://github.com/peterjc/pico_galaxy - Renamed folder and adopted README.rst naming. +v0.0.5 - Correct automated dependency definition ======= ====================================================================== @@ -85,7 +86,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf seq_rename.tar.gz tools/seq_rename/README.rst tools/seq_rename/seq_rename.* tools/seq_rename/repository_dependencies.xml test-data/four_human_proteins.fasta test-data/four_human_proteins.rename.tabular test-data/four_human_proteins.rename.fasta + $ tar -czf seq_rename.tar.gz tools/seq_rename/README.rst tools/seq_rename/seq_rename.* tools/seq_rename/tool_dependencies.xml test-data/four_human_proteins.fasta test-data/four_human_proteins.rename.tabular test-data/four_human_proteins.rename.fasta Check this worked:: @@ -93,7 +94,7 @@ tools/seq_rename/README.rst tools/seq_rename/seq_rename.py tools/seq_rename/seq_rename.xml - tools/seq_rename/repository_dependencies.xml + tools/seq_rename/tool_dependencies.xml test-data/four_human_proteins.fasta test-data/four_human_proteins.rename.tabular test-data/four_human_proteins.rename.fasta
--- a/tools/seq_rename/repository_dependencies.xml Fri Sep 27 06:10:29 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<repositories description="This requires Biopython as a dependency."> -<!-- Leave out the tool shed and revision to get the current - tool shed and latest revision at the time of upload --> -<repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> -</repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/seq_rename/tool_dependencies.xml Wed Nov 20 12:11:32 2013 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="biopython" version="1.62"> + <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>