Mercurial > repos > peterjc > seq_primer_clip
changeset 22:3c37b27efa2f draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_primer_clip commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
| author | peterjc |
|---|---|
| date | Fri, 09 Nov 2018 11:10:32 -0500 |
| parents | fe9a5c934670 |
| children | 0c79302b2c15 |
| files | tools/seq_primer_clip/seq_primer_clip.py tools/seq_primer_clip/seq_primer_clip.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/seq_primer_clip/seq_primer_clip.py Fri Sep 15 10:30:55 2017 -0400 +++ b/tools/seq_primer_clip/seq_primer_clip.py Fri Nov 09 11:10:32 2018 -0500 @@ -34,7 +34,7 @@ import sys if "-v" in sys.argv or "--version" in sys.argv: - print("v0.0.16") + print("v0.0.17") sys.exit(0) from galaxy_utils.sequence.fasta import fastaReader, fastaWriter @@ -122,7 +122,7 @@ } ambiguous_dna_re = {} -for letter, values in ambiguous_dna_values.iteritems(): +for letter, values in ambiguous_dna_values.items(): if len(values) == 1: ambiguous_dna_re[letter] = values else:
--- a/tools/seq_primer_clip/seq_primer_clip.xml Fri Sep 15 10:30:55 2017 -0400 +++ b/tools/seq_primer_clip/seq_primer_clip.xml Fri Nov 09 11:10:32 2018 -0500 @@ -118,7 +118,7 @@ Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip