Mercurial > repos > peterjc > seq_filter_by_mapping
changeset 16:1c45e8e10434 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
| author | peterjc |
|---|---|
| date | Fri, 09 Nov 2018 11:07:51 -0500 |
| parents | bb58a278b1d8 |
| children | ab0e7967c9dc |
| files | tools/seq_filter_by_mapping/seq_filter_by_mapping.py tools/seq_filter_by_mapping/seq_filter_by_mapping.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Sep 15 10:30:20 2017 -0400 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Nov 09 11:07:51 2018 -0500 @@ -10,7 +10,7 @@ Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This script is copyright 2014 by Peter Cock, The James Hutton Institute (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved. @@ -213,7 +213,7 @@ def crude_fasta_iterator(handle): - """Yields tuples, record ID and the full record as a string.""" + """Yield tuples, record ID and the full record as a string.""" while True: line = handle.readline() if line == "":
--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Sep 15 10:30:20 2017 -0400 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Nov 09 11:07:51 2018 -0500 @@ -97,7 +97,7 @@ Cock et al (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_mapping