# HG changeset patch
# User peterjc
# Date 1541779671 18000
# Node ID 1c45e8e104349dd6a9cb0b70302b19f7c0394283
# Parent  bb58a278b1d8dde2b86678c72c25f9697374d823
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty

diff -r bb58a278b1d8 -r 1c45e8e10434 tools/seq_filter_by_mapping/seq_filter_by_mapping.py
--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py	Fri Sep 15 10:30:20 2017 -0400
+++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py	Fri Nov 09 11:07:51 2018 -0500
@@ -10,7 +10,7 @@
 
 Cock et al 2009. Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
-http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
+https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
 This script is copyright 2014 by Peter Cock, The James Hutton Institute
 (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved.
@@ -213,7 +213,7 @@
 
 
 def crude_fasta_iterator(handle):
-    """Yields tuples, record ID and the full record as a string."""
+    """Yield tuples, record ID and the full record as a string."""
     while True:
         line = handle.readline()
         if line == "":
diff -r bb58a278b1d8 -r 1c45e8e10434 tools/seq_filter_by_mapping/seq_filter_by_mapping.xml
--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml	Fri Sep 15 10:30:20 2017 -0400
+++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml	Fri Nov 09 11:07:51 2018 -0500
@@ -97,7 +97,7 @@
 
 Cock et al (2009). Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
-http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
+https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
 This tool is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_mapping