# HG changeset patch # User peterjc # Date 1541779671 18000 # Node ID 1c45e8e104349dd6a9cb0b70302b19f7c0394283 # Parent bb58a278b1d8dde2b86678c72c25f9697374d823 planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty diff -r bb58a278b1d8 -r 1c45e8e10434 tools/seq_filter_by_mapping/seq_filter_by_mapping.py --- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Sep 15 10:30:20 2017 -0400 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Nov 09 11:07:51 2018 -0500 @@ -10,7 +10,7 @@ Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This script is copyright 2014 by Peter Cock, The James Hutton Institute (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved. @@ -213,7 +213,7 @@ def crude_fasta_iterator(handle): - """Yields tuples, record ID and the full record as a string.""" + """Yield tuples, record ID and the full record as a string.""" while True: line = handle.readline() if line == "": diff -r bb58a278b1d8 -r 1c45e8e10434 tools/seq_filter_by_mapping/seq_filter_by_mapping.xml --- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Sep 15 10:30:20 2017 -0400 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Nov 09 11:07:51 2018 -0500 @@ -97,7 +97,7 @@ Cock et al (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_mapping