Mercurial > repos > peterjc > seq_filter_by_id
changeset 6:c311a9e32a60 draft
Uploaded v0.0.6c, citation information
| author | peterjc |
|---|---|
| date | Wed, 11 Sep 2013 06:33:13 -0400 |
| parents | 00153c4efec3 |
| children | 40c30aafa816 |
| files | tools/filters/repository_dependencies.xml tools/filters/seq_filter_by_id.rst tools/filters/seq_filter_by_id.xml |
| diffstat | 3 files changed, 13 insertions(+), 5 deletions(-) [+] |
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--- a/tools/filters/repository_dependencies.xml Mon Jul 29 09:18:49 2013 -0400 +++ b/tools/filters/repository_dependencies.xml Wed Sep 11 06:33:13 2013 -0400 @@ -2,5 +2,5 @@ <repositories description="This requires Biopython as a dependency."> <!-- Leave out the tool shed and revision to get the current tool shed and latest revision at the time of upload --> -<repository changeset_revision="627c7b41b970" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> +<repository changeset_revision="54e5c64b0460" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- a/tools/filters/seq_filter_by_id.rst Mon Jul 29 09:18:49 2013 -0400 +++ b/tools/filters/seq_filter_by_id.rst Wed Sep 11 06:33:13 2013 -0400 @@ -69,6 +69,7 @@ - Automated installation of the Biopython dependency. - Use reStructuredText for this README file. - Adopt standard MIT License. + - Updated citation information (Cock et al. 2013). ======= ======================================================================
--- a/tools/filters/seq_filter_by_id.xml Mon Jul 29 09:18:49 2013 -0400 +++ b/tools/filters/seq_filter_by_id.xml Wed Sep 11 06:33:13 2013 -0400 @@ -102,11 +102,18 @@ matching or not matching your criteria (those with or without their identifier in the filtered tabular file). -**Citation** +**References** + +If you use this Galaxy tool in work leading to a scientific publication please +cite the following papers: -This tool uses Biopython to read and write SFF files. If you use this tool in -scientific work leading to a publication, please cite the Biopython application -note (and Galaxy too of course): +Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013). +Galaxy tools and workflows for sequence analysis with applications +in molecular plant pathology. PeerJ 1:e167 +http://dx.doi.org/10.7717/peerj.167 + +This tool uses Biopython to read and write SFF files, so you may also wish to +cite the Biopython application note (and Galaxy too of course): Cock et al 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.