# HG changeset patch
# User peterjc
# Date 1378895593 14400
# Node ID c311a9e32a60ea86890a24682303f304dff24346
# Parent  00153c4efec3da70919f0f1ce00852c3eba1af7b
Uploaded v0.0.6c, citation information

diff -r 00153c4efec3 -r c311a9e32a60 tools/filters/repository_dependencies.xml
--- a/tools/filters/repository_dependencies.xml	Mon Jul 29 09:18:49 2013 -0400
+++ b/tools/filters/repository_dependencies.xml	Wed Sep 11 06:33:13 2013 -0400
@@ -2,5 +2,5 @@
 <repositories description="This requires Biopython as a dependency.">
 <!-- Leave out the tool shed and revision to get the current
      tool shed and latest revision at the time of upload -->
-<repository changeset_revision="627c7b41b970" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+<repository changeset_revision="54e5c64b0460" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 </repositories>
diff -r 00153c4efec3 -r c311a9e32a60 tools/filters/seq_filter_by_id.rst
--- a/tools/filters/seq_filter_by_id.rst	Mon Jul 29 09:18:49 2013 -0400
+++ b/tools/filters/seq_filter_by_id.rst	Wed Sep 11 06:33:13 2013 -0400
@@ -69,6 +69,7 @@
          - Automated installation of the Biopython dependency.
          - Use reStructuredText for this README file.
          - Adopt standard MIT License.
+         - Updated citation information (Cock et al. 2013).
 ======= ======================================================================
 
 
diff -r 00153c4efec3 -r c311a9e32a60 tools/filters/seq_filter_by_id.xml
--- a/tools/filters/seq_filter_by_id.xml	Mon Jul 29 09:18:49 2013 -0400
+++ b/tools/filters/seq_filter_by_id.xml	Wed Sep 11 06:33:13 2013 -0400
@@ -102,11 +102,18 @@
 matching or not matching your criteria (those with or without their identifier
 in the filtered tabular file).
 
-**Citation**
+**References**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite the following papers:
 
-This tool uses Biopython to read and write SFF files. If you use this tool in
-scientific work leading to a publication, please cite the Biopython application
-note (and Galaxy too of course):
+Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+http://dx.doi.org/10.7717/peerj.167
+
+This tool uses Biopython to read and write SFF files, so you may also wish to
+cite the Biopython application note (and Galaxy too of course):
 
 Cock et al 2009. Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.