Mercurial > repos > peterjc > samtools_bam2fq
changeset 1:03adf9de156e draft
Uploaded v0.0.1a, had forgotten to include tool_dependencies.xml
| author | peterjc |
|---|---|
| date | Mon, 03 Nov 2014 11:44:44 -0500 |
| parents | 1b9ed562835c |
| children | 27135d7637b6 |
| files | tools/samtools_bam2fq/README.rst tools/samtools_bam2fq/tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/tools/samtools_bam2fq/README.rst Mon Nov 03 11:39:58 2014 -0500 +++ b/tools/samtools_bam2fq/README.rst Mon Nov 03 11:44:44 2014 -0500 @@ -27,7 +27,6 @@ folder, e.g. in a ``tools/samtools_bam2fq`` folder: * ``samtools_bam2fq.xml`` (the Galaxy tool definition) -* ``samtools_bam2fq.py`` (the Python wrapper script) * ``README.rst`` (this file) You will also need to modify the ``tools_conf.xml`` file to tell Galaxy to offer @@ -62,7 +61,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf samtools_bam2fq.tar.gz tools/samtools_bam2fq/README.rst tools/samtools_bam2fq/samtools_bam2fq.xml test-data/sam_spec_padded.bam test-data/sam_spec_padded.sam test-data/sam_spec_padded.depad.bam test-data/sam_spec_padded.bam2fq.fastq + $ tar -czf samtools_bam2fq.tar.gz tools/samtools_bam2fq/README.rst tools/samtools_bam2fq/samtools_bam2fq.xml tools/samtools_bam2fq/tool_dependencies.xml test-data/sam_spec_padded.bam test-data/sam_spec_padded.sam test-data/sam_spec_padded.depad.bam test-data/sam_spec_padded.bam2fq.fastq Check this worked::
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools_bam2fq/tool_dependencies.xml Mon Nov 03 11:44:44 2014 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="samtools" version="1.1"> + <repository changeset_revision="c01b111a243b" name="package_samtools_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>