# HG changeset patch # User peterjc # Date 1415033084 18000 # Node ID 03adf9de156e395bdf0e2c561e3e3b3d817c463f # Parent 1b9ed562835c2f007be61d713a9fdf4167d453f6 Uploaded v0.0.1a, had forgotten to include tool_dependencies.xml diff -r 1b9ed562835c -r 03adf9de156e tools/samtools_bam2fq/README.rst --- a/tools/samtools_bam2fq/README.rst Mon Nov 03 11:39:58 2014 -0500 +++ b/tools/samtools_bam2fq/README.rst Mon Nov 03 11:44:44 2014 -0500 @@ -27,7 +27,6 @@ folder, e.g. in a ``tools/samtools_bam2fq`` folder: * ``samtools_bam2fq.xml`` (the Galaxy tool definition) -* ``samtools_bam2fq.py`` (the Python wrapper script) * ``README.rst`` (this file) You will also need to modify the ``tools_conf.xml`` file to tell Galaxy to offer @@ -62,7 +61,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf samtools_bam2fq.tar.gz tools/samtools_bam2fq/README.rst tools/samtools_bam2fq/samtools_bam2fq.xml test-data/sam_spec_padded.bam test-data/sam_spec_padded.sam test-data/sam_spec_padded.depad.bam test-data/sam_spec_padded.bam2fq.fastq + $ tar -czf samtools_bam2fq.tar.gz tools/samtools_bam2fq/README.rst tools/samtools_bam2fq/samtools_bam2fq.xml tools/samtools_bam2fq/tool_dependencies.xml test-data/sam_spec_padded.bam test-data/sam_spec_padded.sam test-data/sam_spec_padded.depad.bam test-data/sam_spec_padded.bam2fq.fastq Check this worked:: diff -r 1b9ed562835c -r 03adf9de156e tools/samtools_bam2fq/tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools_bam2fq/tool_dependencies.xml Mon Nov 03 11:44:44 2014 -0500 @@ -0,0 +1,6 @@ + + + + + +