Mercurial > repos > peterjc > rxlr_venn_workflow
changeset 5:41d8f46e0343 draft
Uploaded v0.0.1e, README formatting changes
| author | peterjc |
|---|---|
| date | Mon, 08 Jul 2013 13:00:36 -0400 |
| parents | 25e0ffd4f762 |
| children | b1047023ffbb |
| files | README.txt |
| diffstat | 1 files changed, 23 insertions(+), 21 deletions(-) [+] |
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--- a/README.txt Mon Jul 08 11:32:40 2013 -0400 +++ b/README.txt Mon Jul 08 13:00:36 2013 -0400 @@ -1,41 +1,43 @@ -This Tool Shed Repository contains a workflow for comparing three RXLR -prediction methods with a Venn Diagram, and creates a FASTA file of any -proteins passing all three methods. +This is package is a Galaxy workflow for comparing three RXLR prediction +methods with a Venn Diagram, and creates a FASTA file of any proteins +passing all three methods. + +See http://www.galaxyproject.org for information about the Galaxy Project. References ========== -Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, Anna O. Avrova, -Juan G. Morales, Eleanor M. Gilroy, Miles R. Armstrong, Severine Grouffaud, -Pieter van West, Sean Chapman, Ingo Hein, Ian K. Toth, Leighton Pritchard -and Paul R. J. Birch A translocation signal for delivery of oomycete -effector proteins into host plant cells. Nature 450:115-118, 2007. +Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, et al. (2007) +A translocation signal for delivery of oomycete effector proteins into +host plant cells. Nature 450:115-118. http://dx.doi.org/10.1038/nature06203 -Joe Win, William Morgan, Jorunn Bos, Ksenia V. Krasileva, Liliana M. Cano, -Angela Chaparro-Garcia, Randa Ammar, Brian J. Staskawicz and Sophien Kamoun. +Joe Win, William Morgan, Jorunn Bos, et al. (2007) Adaptive evolution has targeted the C-terminal domain of the RXLR effectors -of plant pathogenic oomycetes. The Plant Cell 19:2349-2369, 2007. +of plant pathogenic oomycetes. The Plant Cell 19:2349-2369. http://dx.doi.org/10.1105/tpc.107.051037 -Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, Joe Win, -Thirumala-Devi Kanneganti, Carolyn Young, Sophien Kamoun and Kasturi Haldar. +Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, et al. (2006) The malarial host-targeting signal is conserved in the Irish potato famine -pathogen. PLoS Pathogens, 2(5):e50, 2006. +pathogen. PLoS Pathogens 2(5):e50. http://dx.doi.org/10.1371/journal.ppat.0020050 Availability ============ -This workflow is available on the main Galaxy Tool Shed: +This workflow is available to download and/or install from the main +Galaxy Tool Shed: + http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow -Test releases (which should not be used) are on the Test Tool Shed: +Test releases (which should not normally be used) are on the Test Tool Shed: + http://testtoolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow Development is being done on github here: + https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow @@ -61,11 +63,11 @@ To prepare the tar-ball for uploading to the Tool Shed, I use this: -$ tar -cf rxlr_venn_workflow.tar.gz README.txt repository_dependencies.xml rxlr_venn_workflow.ga + $ tar -cf rxlr_venn_workflow.tar.gz README.txt repository_dependencies.xml rxlr_venn_workflow.ga Check this, -$ tar -tzf rxlr_venn_workflow.tar.gz -README.txt -repository_dependencies.xml -rxlr_venn_workflow.ga + $ tar -tzf rxlr_venn_workflow.tar.gz + README.txt + repository_dependencies.xml + rxlr_venn_workflow.ga