# HG changeset patch
# User peterjc
# Date 1373302836 14400
# Node ID 41d8f46e0343e21538f6f39a5a66448d8bc518d1
# Parent  25e0ffd4f762860cb37f90a3c0f329d55b4a27c9
Uploaded v0.0.1e, README formatting changes

diff -r 25e0ffd4f762 -r 41d8f46e0343 README.txt
--- a/README.txt	Mon Jul 08 11:32:40 2013 -0400
+++ b/README.txt	Mon Jul 08 13:00:36 2013 -0400
@@ -1,41 +1,43 @@
-This Tool Shed Repository contains a workflow for comparing three RXLR
-prediction methods with a Venn Diagram, and creates a FASTA file of any
-proteins passing all three methods.
+This is package is a Galaxy workflow for comparing three RXLR prediction
+methods with a Venn Diagram, and creates a FASTA file of any proteins
+passing all three methods.
+
+See http://www.galaxyproject.org for information about the Galaxy Project.
 
 
 References
 ==========
 
-Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, Anna O. Avrova,
-Juan G. Morales, Eleanor M. Gilroy, Miles R. Armstrong, Severine Grouffaud,
-Pieter van West, Sean Chapman, Ingo Hein, Ian K. Toth, Leighton Pritchard
-and Paul R. J. Birch A translocation signal for delivery of oomycete
-effector proteins into host plant cells. Nature 450:115-118, 2007.
+Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, et al. (2007)
+A translocation signal for delivery of oomycete effector proteins into
+host plant cells. Nature 450:115-118.
 http://dx.doi.org/10.1038/nature06203
 
-Joe Win, William Morgan, Jorunn Bos, Ksenia V. Krasileva, Liliana M. Cano,
-Angela Chaparro-Garcia, Randa Ammar, Brian J. Staskawicz and Sophien Kamoun.
+Joe Win, William Morgan, Jorunn Bos, et al. (2007)
 Adaptive evolution has targeted the C-terminal domain of the RXLR effectors
-of plant pathogenic oomycetes. The Plant Cell 19:2349-2369, 2007.
+of plant pathogenic oomycetes. The Plant Cell 19:2349-2369.
 http://dx.doi.org/10.1105/tpc.107.051037
 
-Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, Joe Win,
-Thirumala-Devi Kanneganti, Carolyn Young, Sophien Kamoun and Kasturi Haldar.
+Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, et al. (2006)
 The malarial host-targeting signal is conserved in the Irish potato famine
-pathogen. PLoS Pathogens, 2(5):e50, 2006.
+pathogen. PLoS Pathogens 2(5):e50.
 http://dx.doi.org/10.1371/journal.ppat.0020050
 
 
 Availability
 ============
 
-This workflow is available on the main Galaxy Tool Shed:
+This workflow is available to download and/or install from the main
+Galaxy Tool Shed:
+
 http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow
 
-Test releases (which should not be used) are on the Test Tool Shed:
+Test releases (which should not normally be used) are on the Test Tool Shed:
+
 http://testtoolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow
 
 Development is being done on github here:
+
 https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow
 
 
@@ -61,11 +63,11 @@
 
 To prepare the tar-ball for uploading to the Tool Shed, I use this:
 
-$ tar -cf rxlr_venn_workflow.tar.gz README.txt repository_dependencies.xml rxlr_venn_workflow.ga
+    $ tar -cf rxlr_venn_workflow.tar.gz README.txt repository_dependencies.xml rxlr_venn_workflow.ga
 
 Check this,
 
-$ tar -tzf rxlr_venn_workflow.tar.gz
-README.txt
-repository_dependencies.xml
-rxlr_venn_workflow.ga
+    $ tar -tzf rxlr_venn_workflow.tar.gz
+    README.txt
+    repository_dependencies.xml
+    rxlr_venn_workflow.ga