Mercurial > repos > peterjc > rxlr_venn_workflow
changeset 14:25076bddafe8 draft
Uploaded revision to update the citation
| author | peterjc |
|---|---|
| date | Fri, 25 Oct 2013 10:20:01 -0400 |
| parents | 120d01a025a9 |
| children | 00388d97c6e2 |
| files | README.rst rxlr_venn_workflow.ga |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/README.rst Fri Oct 04 11:17:45 2013 -0400 +++ b/README.rst Fri Oct 25 10:20:01 2013 -0400 @@ -52,10 +52,11 @@ If you use this workflow directly, or a derivative of it, in work leading to a scientific publication, please cite: -Cock, P.J.A. and Pritchard, L. 2013. Galaxy as a platform for identifying +Cock, P.J.A. and Pritchard, L. (2014). Galaxy as a platform for identifying candidate pathogen effectors. Chapter 1 in "Plant-Pathogen Interactions: -Methods and Protocols (Second Edition)"; Methods in Molecular Biology. -Humana Press, Springer. In press. +Methods and Protocols (Second Edition)"; P. Birch, J. Jones, and J.I. Bos, eds. +Methods in Molecular Biology. Humana Press, Springer. ISBN 978-1-62703-985-7. +http://www.springer.com/life+sciences/plant+sciences/book/978-1-62703-985-7 For the associated RXLR Galaxy tool, please cite:
--- a/rxlr_venn_workflow.ga Fri Oct 04 11:17:45 2013 -0400 +++ b/rxlr_venn_workflow.ga Fri Oct 25 10:20:01 2013 -0400 @@ -1,6 +1,6 @@ { "a_galaxy_workflow": "true", - "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.<br />\n<br />\nThis workflow is <a href=\"http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow\" target=\"_blank\">available on the Galaxy Tool Shed</a> with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2013).", + "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.<br />\n<br />\nThis workflow is <a href=\"http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow\" target=\"_blank\">available on the Galaxy Tool Shed</a> with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2014).", "format-version": "0.1", "name": "3 RXLR methods, Venn Diagram, overlap FASTA", "steps": {