# HG changeset patch # User peterjc # Date 1382710801 14400 # Node ID 25076bddafe854c943a66ec74fc6af5725ae9abd # Parent 120d01a025a97e9777d5717f3cf9fa41c4bde0a2 Uploaded revision to update the citation diff -r 120d01a025a9 -r 25076bddafe8 README.rst --- a/README.rst Fri Oct 04 11:17:45 2013 -0400 +++ b/README.rst Fri Oct 25 10:20:01 2013 -0400 @@ -52,10 +52,11 @@ If you use this workflow directly, or a derivative of it, in work leading to a scientific publication, please cite: -Cock, P.J.A. and Pritchard, L. 2013. Galaxy as a platform for identifying +Cock, P.J.A. and Pritchard, L. (2014). Galaxy as a platform for identifying candidate pathogen effectors. Chapter 1 in "Plant-Pathogen Interactions: -Methods and Protocols (Second Edition)"; Methods in Molecular Biology. -Humana Press, Springer. In press. +Methods and Protocols (Second Edition)"; P. Birch, J. Jones, and J.I. Bos, eds. +Methods in Molecular Biology. Humana Press, Springer. ISBN 978-1-62703-985-7. +http://www.springer.com/life+sciences/plant+sciences/book/978-1-62703-985-7 For the associated RXLR Galaxy tool, please cite: diff -r 120d01a025a9 -r 25076bddafe8 rxlr_venn_workflow.ga --- a/rxlr_venn_workflow.ga Fri Oct 04 11:17:45 2013 -0400 +++ b/rxlr_venn_workflow.ga Fri Oct 25 10:20:01 2013 -0400 @@ -1,6 +1,6 @@ { "a_galaxy_workflow": "true", - "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.
\n
\nThis workflow is available on the Galaxy Tool Shed with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2013).", + "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.
\n
\nThis workflow is available on the Galaxy Tool Shed with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2014).", "format-version": "0.1", "name": "3 RXLR methods, Venn Diagram, overlap FASTA", "steps": {