Mercurial > repos > peterjc > rxlr_venn_workflow

annotate rxlr_venn_workflow.ga @ 12:923fa2577564 draft

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Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
author peterjc
date Wed, 21 Aug 2013 13:00:43 -0400
parents e21be67dbc91
children 25076bddafe8
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1 {
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2 "a_galaxy_workflow": "true",
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923fa2577564 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
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3 "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.<br />\n<br />\nThis workflow is <a href=\"http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow\" target=\"_blank\">available on the Galaxy Tool Shed</a> with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2013).",
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4 "format-version": "0.1",
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5 "name": "3 RXLR methods, Venn Diagram, overlap FASTA",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Input Dataset"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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22 },
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23 "tool_errors": null,
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24 "tool_id": null,
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25 "tool_state": "{\"name\": \"Input Dataset\"}",
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27 "type": "data_input",
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28 "user_outputs": []
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29 },
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30 "1": {
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31 "annotation": "",
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32 "id": 1,
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33 "input_connections": {
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34 "fasta_file": {
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35 "id": 0,
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36 "output_name": "output"
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37 }
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38 },
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39 "inputs": [],
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40 "name": "RXLR Motifs",
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41 "outputs": [
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42 {
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43 "name": "tabular_file",
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45 }
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46 ],
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57 },
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59 "tool_id": "rxlr_motifs",
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923fa2577564 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
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60 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Whisson2007\\\"\"}",
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61 "tool_version": "0.0.7",
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62 "type": "tool",
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63 "user_outputs": []
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64 },
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65 "2": {
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66 "annotation": "",
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69 "fasta_file": {
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70 "id": 0,
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71 "output_name": "output"
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72 }
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73 },
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74 "inputs": [],
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75 "name": "RXLR Motifs",
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76 "outputs": [
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77 {
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92 },
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94 "tool_id": "rxlr_motifs",
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95 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Win2007\\\"\"}",
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96 "tool_version": "0.0.7",
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97 "type": "tool",
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98 "user_outputs": []
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99 },
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100 "3": {
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101 "annotation": "",
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102 "id": 3,
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103 "input_connections": {
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104 "fasta_file": {
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105 "id": 0,
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106 "output_name": "output"
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107 }
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108 },
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109 "inputs": [],
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110 "name": "RXLR Motifs",
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111 "outputs": [
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112 {
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113 "name": "tabular_file",
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114 "type": "tabular"
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115 }
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116 ],
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117 "position": {
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118 "left": 420,
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120 },
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124 "action_type": "HideDatasetAction",
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127 },
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128 "tool_errors": null,
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129 "tool_id": "rxlr_motifs",
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130 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Bhattacharjee2006\\\"\"}",
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131 "tool_version": "0.0.7",
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132 "type": "tool",
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133 "user_outputs": []
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