annotate rxlr_venn_workflow.ga @ 0:e21be67dbc91 draft

Uploaded with initial attempt at setting the dependencies.
author peterjc
date Mon, 06 May 2013 13:58:44 -0400
parents
children 923fa2577564
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
1 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
2 "a_galaxy_workflow": "true",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
3 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
4 "format-version": "0.1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
5 "name": "3 RXLR methods, Venn Diagram, overlap FASTA",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
6 "steps": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
7 "0": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
8 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
9 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
10 "input_connections": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
11 "inputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
12 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
13 "description": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
14 "name": "Input Dataset"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
15 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
16 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
17 "name": "Input dataset",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
18 "outputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
19 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
20 "left": 200,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
21 "top": 363
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
22 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
23 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
24 "tool_id": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
25 "tool_state": "{\"name\": \"Input Dataset\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
26 "tool_version": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
27 "type": "data_input",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
28 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
29 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
30 "1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
31 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
32 "id": 1,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
33 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
34 "fasta_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
35 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
36 "output_name": "output"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
37 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
38 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
39 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
40 "name": "RXLR Motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
41 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
42 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
43 "name": "tabular_file",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
44 "type": "tabular"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
45 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
46 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
47 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
48 "left": 420,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
49 "top": 363
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
50 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
51 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
52 "HideDatasetActiontabular_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
53 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
54 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
55 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
56 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
57 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
58 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
59 "tool_id": "rxlr_motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
60 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Whisson2007\\\"\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
61 "tool_version": "0.0.6",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
62 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
63 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
64 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
65 "2": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
66 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
67 "id": 2,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
68 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
69 "fasta_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
70 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
71 "output_name": "output"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
72 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
73 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
74 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
75 "name": "RXLR Motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
76 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
77 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
78 "name": "tabular_file",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
79 "type": "tabular"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
80 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
81 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
82 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
83 "left": 420,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
84 "top": 483
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
85 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
86 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
87 "HideDatasetActiontabular_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
88 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
89 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
90 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
91 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
92 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
93 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
94 "tool_id": "rxlr_motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
95 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Win2007\\\"\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
96 "tool_version": "0.0.6",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
97 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
98 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
99 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
100 "3": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
101 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
102 "id": 3,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
103 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
104 "fasta_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
105 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
106 "output_name": "output"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
107 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
108 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
109 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
110 "name": "RXLR Motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
111 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
112 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
113 "name": "tabular_file",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
114 "type": "tabular"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
115 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
116 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
117 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
118 "left": 420,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
119 "top": 603
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
120 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
121 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
122 "HideDatasetActiontabular_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
123 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
124 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
125 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
126 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
127 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
128 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
129 "tool_id": "rxlr_motifs",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
130 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Bhattacharjee2006\\\"\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
131 "tool_version": "0.0.6",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
132 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
133 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
134 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
135 "4": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
136 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
137 "id": 4,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
138 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
139 "input": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
140 "id": 1,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
141 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
142 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
143 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
144 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
145 "name": "Filter",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
146 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
147 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
148 "name": "out_file1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
149 "type": "input"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
150 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
151 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
152 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
153 "left": 640,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
154 "top": 363
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
155 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
156 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
157 "HideDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
158 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
159 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
160 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
161 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
162 "RenameDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
163 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
164 "newname": "Positive Whisson et al. (2007) results"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
165 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
166 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
167 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
168 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
169 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
170 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
171 "tool_id": "Filter1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
172 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c2=='Y'\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
173 "tool_version": "1.1.0",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
174 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
175 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
176 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
177 "5": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
178 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
179 "id": 5,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
180 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
181 "input": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
182 "id": 2,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
183 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
184 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
185 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
186 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
187 "name": "Filter",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
188 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
189 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
190 "name": "out_file1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
191 "type": "input"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
192 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
193 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
194 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
195 "left": 640,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
196 "top": 483
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
197 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
198 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
199 "HideDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
200 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
201 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
202 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
203 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
204 "RenameDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
205 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
206 "newname": "Positive Win et al. (2007) results"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
207 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
208 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
209 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
210 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
211 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
212 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
213 "tool_id": "Filter1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
214 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c2=='Y'\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
215 "tool_version": "1.1.0",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
216 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
217 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
218 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
219 "6": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
220 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
221 "id": 6,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
222 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
223 "input": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
224 "id": 3,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
225 "output_name": "tabular_file"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
226 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
227 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
228 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
229 "name": "Filter",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
230 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
231 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
232 "name": "out_file1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
233 "type": "input"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
234 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
235 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
236 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
237 "left": 640,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
238 "top": 603
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
239 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
240 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
241 "HideDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
242 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
243 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
244 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
245 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
246 "RenameDatasetActionout_file1": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
247 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
248 "newname": "Positive Bhattacharjee et al. (2006) results"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
249 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
250 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
251 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
252 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
253 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
254 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
255 "tool_id": "Filter1",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
256 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c2=='Y'\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
257 "tool_version": "1.1.0",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
258 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
259 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
260 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
261 "7": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
262 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
263 "id": 7,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
264 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
265 "input_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
266 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
267 "output_name": "output"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
268 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
269 "input_tabular": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
270 "id": 4,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
271 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
272 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
273 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
274 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
275 "name": "Filter sequences by ID",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
276 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
277 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
278 "name": "output_pos",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
279 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
280 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
281 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
282 "name": "output_neg",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
283 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
284 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
285 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
286 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
287 "left": 944,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
288 "top": 753
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
289 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
290 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
291 "HideDatasetActionoutput_neg": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
292 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
293 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
294 "output_name": "output_neg"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
295 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
296 "HideDatasetActionoutput_pos": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
297 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
298 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
299 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
300 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
301 "RenameDatasetActionoutput_pos": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
302 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
303 "newname": "Positive Whisson et al. (2007) results"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
304 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
305 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
306 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
307 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
308 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
309 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
310 "tool_id": "seq_filter_by_id",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
311 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
312 "tool_version": "0.0.5",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
313 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
314 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
315 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
316 "8": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
317 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
318 "id": 8,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
319 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
320 "sets_0|set": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
321 "id": 4,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
322 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
323 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
324 "sets_1|set": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
325 "id": 5,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
326 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
327 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
328 "sets_2|set": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
329 "id": 6,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
330 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
331 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
332 "universe|main": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
333 "id": 0,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
334 "output_name": "output"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
335 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
336 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
337 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
338 "name": "Venn Diagram",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
339 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
340 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
341 "name": "PDF",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
342 "type": "pdf"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
343 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
344 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
345 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
346 "left": 1086,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
347 "top": 200
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
348 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
349 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
350 "RenameDatasetActionPDF": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
351 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
352 "newname": "Venn Diagram comparing RXLR predictions"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
353 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
354 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
355 "output_name": "PDF"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
356 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
357 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
358 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
359 "tool_id": "venn_list",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
360 "tool_state": "{\"__page__\": 0, \"universe\": \"{\\\"main\\\": null, \\\"type_select\\\": \\\"explicit\\\", \\\"__current_case__\\\": 0}\", \"sets\": \"[{\\\"__index__\\\": 0, \\\"set\\\": null, \\\"lab\\\": \\\"Whisson et al.\\\"}, {\\\"__index__\\\": 1, \\\"set\\\": null, \\\"lab\\\": \\\"Win et al.\\\"}, {\\\"__index__\\\": 2, \\\"set\\\": null, \\\"lab\\\": \\\"Bhattacharjee et al.\\\"}]\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"main_lab\": \"\\\"Venn Diagram comparing RXLR predictions\\\"\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
361 "tool_version": "0.0.4",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
362 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
363 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
364 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
365 "9": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
366 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
367 "id": 9,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
368 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
369 "input_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
370 "id": 7,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
371 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
372 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
373 "input_tabular": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
374 "id": 5,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
375 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
376 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
377 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
378 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
379 "name": "Filter sequences by ID",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
380 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
381 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
382 "name": "output_pos",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
383 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
384 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
385 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
386 "name": "output_neg",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
387 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
388 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
389 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
390 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
391 "left": 1321,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
392 "top": 621
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
393 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
394 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
395 "HideDatasetActionoutput_neg": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
396 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
397 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
398 "output_name": "output_neg"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
399 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
400 "HideDatasetActionoutput_pos": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
401 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
402 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
403 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
404 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
405 "RenameDatasetActionoutput_pos": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
406 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
407 "newname": "Positive Whisson et al. (2007) and Win et al. (2007) results"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
408 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
409 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
410 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
411 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
412 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
413 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
414 "tool_id": "seq_filter_by_id",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
415 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
416 "tool_version": "0.0.5",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
417 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
418 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
419 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
420 "10": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
421 "annotation": "",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
422 "id": 10,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
423 "input_connections": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
424 "input_file": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
425 "id": 9,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
426 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
427 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
428 "input_tabular": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
429 "id": 6,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
430 "output_name": "out_file1"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
431 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
432 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
433 "inputs": [],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
434 "name": "Filter sequences by ID",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
435 "outputs": [
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
436 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
437 "name": "output_pos",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
438 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
439 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
440 {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
441 "name": "output_neg",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
442 "type": "fasta"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
443 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
444 ],
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
445 "position": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
446 "left": 1641,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
447 "top": 391
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
448 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
449 "post_job_actions": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
450 "HideDatasetActionoutput_neg": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
451 "action_arguments": {},
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
452 "action_type": "HideDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
453 "output_name": "output_neg"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
454 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
455 "RenameDatasetActionoutput_pos": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
456 "action_arguments": {
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
457 "newname": "RXLR by all 3 methods"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
458 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
459 "action_type": "RenameDatasetAction",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
460 "output_name": "output_pos"
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
461 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
462 },
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
463 "tool_errors": null,
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
464 "tool_id": "seq_filter_by_id",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
465 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
466 "tool_version": "0.0.5",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
467 "type": "tool",
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
468 "user_outputs": []
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
469 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
470 }
e21be67dbc91 Uploaded with initial attempt at setting the dependencies.
peterjc
parents:
diff changeset
471 }