Mercurial > repos > peterjc > predictnls
changeset 9:ddfffb16b98d draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty
| author | peterjc |
|---|---|
| date | Fri, 21 Apr 2017 12:04:01 -0400 |
| parents | 07b1cda830b3 |
| children | a3187d5724c4 |
| files | tools/predictnls/README.rst tools/predictnls/predictnls.xml |
| diffstat | 2 files changed, 5 insertions(+), 11 deletions(-) [+] |
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--- a/tools/predictnls/README.rst Thu Feb 09 11:24:45 2017 -0500 +++ b/tools/predictnls/README.rst Fri Apr 21 12:04:01 2017 -0400 @@ -1,7 +1,7 @@ Python re-implementation of predictNLS with Galaxy wrapper ========================================================== -This Galaxy tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This Galaxy tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. @@ -66,6 +66,8 @@ v0.0.7 - Tool definition now embeds citation information. v0.0.8 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). + - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ======================================================================
--- a/tools/predictnls/predictnls.xml Thu Feb 09 11:24:45 2017 -0500 +++ b/tools/predictnls/predictnls.xml Fri Apr 21 12:04:01 2017 -0400 @@ -1,15 +1,7 @@ <tool id="predictnls" name="PredictNLS" version="0.0.8"> <description>Find nuclear localization signals (NLSs) in protein sequences</description> - <requirements> - <requirement type="binary">predictnls</requirement> - </requirements> - <stdio> - <!-- Assume anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <command interpreter="python"> - predictnls.py $fasta_file $tabular_file + <command detect_errors="aggressive"> +python $__tool_directory__/predictnls.py '$fasta_file' '$tabular_file' </command> <inputs> <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/>