# HG changeset patch
# User peterjc
# Date 1492790641 14400
# Node ID ddfffb16b98d5019fd0a18dc1203aa258d4a7e2d
# Parent  07b1cda830b3c52fa2092ad7f69f3589274d7138
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty

diff -r 07b1cda830b3 -r ddfffb16b98d tools/predictnls/README.rst
--- a/tools/predictnls/README.rst	Thu Feb 09 11:24:45 2017 -0500
+++ b/tools/predictnls/README.rst	Fri Apr 21 12:04:01 2017 -0400
@@ -1,7 +1,7 @@
 Python re-implementation of predictNLS with Galaxy wrapper
 ==========================================================
 
-This Galaxy tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This Galaxy tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
@@ -66,6 +66,8 @@
 v0.0.7  - Tool definition now embeds citation information.
 v0.0.8  - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
diff -r 07b1cda830b3 -r ddfffb16b98d tools/predictnls/predictnls.xml
--- a/tools/predictnls/predictnls.xml	Thu Feb 09 11:24:45 2017 -0500
+++ b/tools/predictnls/predictnls.xml	Fri Apr 21 12:04:01 2017 -0400
@@ -1,15 +1,7 @@
 <tool id="predictnls" name="PredictNLS" version="0.0.8">
     <description>Find nuclear localization signals (NLSs) in protein sequences</description>
-    <requirements>
-        <requirement type="binary">predictnls</requirement>
-    </requirements>
-    <stdio>
-        <!-- Assume anything other than zero is an error -->
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
-    </stdio>
-    <command interpreter="python">
-      predictnls.py $fasta_file $tabular_file
+    <command detect_errors="aggressive">
+python $__tool_directory__/predictnls.py '$fasta_file' '$tabular_file'
     </command>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/>