Mercurial > repos > peterjc > nlstradamus
changeset 14:e3e0574dcb16 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/nlstradamus commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty
| author | peterjc |
|---|---|
| date | Fri, 21 Apr 2017 12:03:35 -0400 |
| parents | 6b0f51b88d32 |
| children | 4c68565ecc6e |
| files | tools/nlstradamus/README.rst tools/nlstradamus/nlstradamus.xml |
| diffstat | 2 files changed, 5 insertions(+), 9 deletions(-) [+] |
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--- a/tools/nlstradamus/README.rst Thu Apr 20 13:37:34 2017 -0400 +++ b/tools/nlstradamus/README.rst Fri Apr 21 12:03:35 2017 -0400 @@ -80,6 +80,8 @@ v0.0.10 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.0.11 - Update tool dependency definition to use cached URL + - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ======================================================================
--- a/tools/nlstradamus/nlstradamus.xml Thu Apr 20 13:37:34 2017 -0400 +++ b/tools/nlstradamus/nlstradamus.xml Fri Apr 21 12:03:35 2017 -0400 @@ -1,16 +1,10 @@ -<tool id="nlstradamus" name="NLStradamus" version="0.0.10"> +<tool id="nlstradamus" name="NLStradamus" version="0.0.11"> <description>Find nuclear localization signals (NLSs) in protein sequences</description> <requirements> - <requirement type="binary">NLStradamus</requirement> <requirement type="package" version="1.8">NLStradamus</requirement> </requirements> - <stdio> - <!-- Assume anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <command> - NLStradamus -i $fasta_file -t $threshold -m $model -a $algorithm -tab > $tabular_file + <command detect_errors="aggressive"> + NLStradamus -i '$fasta_file' -t '$threshold' -m '$model' -a '$algorithm' -tab > '$tabular_file' </command> <inputs> <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/>