# HG changeset patch
# User peterjc
# Date 1492790615 14400
# Node ID e3e0574dcb1667a9ca15ba61538ced658ed56caf
# Parent  6b0f51b88d3276bd56f1e21e8b34f585eb504e31
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/nlstradamus commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty

diff -r 6b0f51b88d32 -r e3e0574dcb16 tools/nlstradamus/README.rst
--- a/tools/nlstradamus/README.rst	Thu Apr 20 13:37:34 2017 -0400
+++ b/tools/nlstradamus/README.rst	Fri Apr 21 12:03:35 2017 -0400
@@ -80,6 +80,8 @@
 v0.0.10 - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
 v0.0.11 - Update tool dependency definition to use cached URL
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
diff -r 6b0f51b88d32 -r e3e0574dcb16 tools/nlstradamus/nlstradamus.xml
--- a/tools/nlstradamus/nlstradamus.xml	Thu Apr 20 13:37:34 2017 -0400
+++ b/tools/nlstradamus/nlstradamus.xml	Fri Apr 21 12:03:35 2017 -0400
@@ -1,16 +1,10 @@
-<tool id="nlstradamus" name="NLStradamus" version="0.0.10">
+<tool id="nlstradamus" name="NLStradamus" version="0.0.11">
     <description>Find nuclear localization signals (NLSs) in protein sequences</description>
     <requirements>
-        <requirement type="binary">NLStradamus</requirement>
         <requirement type="package" version="1.8">NLStradamus</requirement>
     </requirements>
-    <stdio>
-        <!-- Assume anything other than zero is an error -->
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
-    </stdio>
-    <command>
-      NLStradamus -i $fasta_file -t $threshold -m $model -a $algorithm -tab > $tabular_file
+    <command detect_errors="aggressive">
+      NLStradamus -i '$fasta_file' -t '$threshold' -m '$model' -a '$algorithm' -tab > '$tabular_file'
     </command>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/>