Mercurial > repos > peterjc > nlstradamus
changeset 6:2be36fa7565e draft
Uploaded v0.0.8 preview 1, adds links to Tool Shed
| author | peterjc |
|---|---|
| date | Thu, 02 May 2013 13:25:36 -0400 |
| parents | 0967f6a0e13e |
| children | 2a76ca15cb17 |
| files | tools/nlstradamus/nlstradamus.txt tools/nlstradamus/nlstradamus.xml |
| diffstat | 2 files changed, 7 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/tools/nlstradamus/nlstradamus.txt Mon Apr 22 13:35:25 2013 -0400 +++ b/tools/nlstradamus/nlstradamus.txt Thu May 02 13:25:36 2013 -0400 @@ -8,6 +8,9 @@ NLStradamus is a command line tools for predicting nuclear localization signals (NLSs) in a FASTA file of proteins using a Hidden Markov Model (HMM). +This wrapper is available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/peterjc/nlstradamus + A. N. Nguyen Ba, A. Pogoutse, N. Provart, A. M. Moses. NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics. 2009 Jun 29;10(1):202. @@ -66,6 +69,7 @@ - Added unit tests v0.0.7 - Automatic installation of the NLStradamus binary when installed via the Galaxy Tool Shed +v0.0.8 - Link to Tool Shed added to help text and this documentation. Developers
--- a/tools/nlstradamus/nlstradamus.xml Mon Apr 22 13:35:25 2013 -0400 +++ b/tools/nlstradamus/nlstradamus.xml Thu May 02 13:25:36 2013 -0400 @@ -1,4 +1,4 @@ -<tool id="nlstradamus" name="NLStradamus" version="0.0.7"> +<tool id="nlstradamus" name="NLStradamus" version="0.0.8"> <description>Find nuclear localization signals (NLSs) in protein sequences</description> <command> NLStradamus -i $fasta_file -t $threshold -m $model -a $algorithm -tab > $tabular_file @@ -78,5 +78,7 @@ http://www.moseslab.csb.utoronto.ca/NLStradamus +This wrapper is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/nlstradamus </help> </tool>