# HG changeset patch # User peterjc # Date 1367515536 14400 # Node ID 2be36fa7565e4bff05598a6c746de19347f3f9f5 # Parent 0967f6a0e13e7da03ee7055da8eb4bd46000817c Uploaded v0.0.8 preview 1, adds links to Tool Shed diff -r 0967f6a0e13e -r 2be36fa7565e tools/nlstradamus/nlstradamus.txt --- a/tools/nlstradamus/nlstradamus.txt Mon Apr 22 13:35:25 2013 -0400 +++ b/tools/nlstradamus/nlstradamus.txt Thu May 02 13:25:36 2013 -0400 @@ -8,6 +8,9 @@ NLStradamus is a command line tools for predicting nuclear localization signals (NLSs) in a FASTA file of proteins using a Hidden Markov Model (HMM). +This wrapper is available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/peterjc/nlstradamus + A. N. Nguyen Ba, A. Pogoutse, N. Provart, A. M. Moses. NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics. 2009 Jun 29;10(1):202. @@ -66,6 +69,7 @@ - Added unit tests v0.0.7 - Automatic installation of the NLStradamus binary when installed via the Galaxy Tool Shed +v0.0.8 - Link to Tool Shed added to help text and this documentation. Developers diff -r 0967f6a0e13e -r 2be36fa7565e tools/nlstradamus/nlstradamus.xml --- a/tools/nlstradamus/nlstradamus.xml Mon Apr 22 13:35:25 2013 -0400 +++ b/tools/nlstradamus/nlstradamus.xml Thu May 02 13:25:36 2013 -0400 @@ -1,4 +1,4 @@ - + Find nuclear localization signals (NLSs) in protein sequences NLStradamus -i $fasta_file -t $threshold -m $model -a $algorithm -tab > $tabular_file @@ -78,5 +78,7 @@ http://www.moseslab.csb.utoronto.ca/NLStradamus +This wrapper is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/nlstradamus