Mercurial > repos > peterjc > mira_assembler
changeset 24:ad14a345f1b0 draft
planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira3/ commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c
| author | peterjc |
|---|---|
| date | Wed, 07 Jun 2017 12:33:07 -0400 |
| parents | 83a94a5038a7 |
| children | 56dede4f0735 |
| files | tools/mira3/mira.py tools/mira3/tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/mira3/mira.py Thu May 18 13:35:41 2017 -0400 +++ b/tools/mira3/mira.py Wed Jun 07 12:33:07 2017 -0400 @@ -19,7 +19,7 @@ # however there is some pipe error when doing that here. cmd = ["mira", "-v"] try: - child = subprocess.Popen(cmd, + child = subprocess.Popen(cmd, universal_newlines=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT) except Exception as err: @@ -91,7 +91,7 @@ handle = open(out_log, "w") try: # Run MIRA - child = subprocess.Popen(cmd_list, + child = subprocess.Popen(cmd_list, universal_newlines=True, stdout=handle, stderr=subprocess.STDOUT) except Exception as err:
--- a/tools/mira3/tool_dependencies.xml Thu May 18 13:35:41 2017 -0400 +++ b/tools/mira3/tool_dependencies.xml Wed Jun 07 12:33:07 2017 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="MIRA" version="3.4.1.1"> - <repository changeset_revision="a50610140295" name="package_mira_3_4_1_1" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="aff5e2528b9d" name="package_mira_3_4_1_1" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>