# HG changeset patch
# User peterjc
# Date 1496853187 14400
# Node ID ad14a345f1b0d0f2e3061e0558715cc90d4cb636
# Parent  83a94a5038a7032107c9ab794c8a2246cf36058f
planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira3/ commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c

diff -r 83a94a5038a7 -r ad14a345f1b0 tools/mira3/mira.py
--- a/tools/mira3/mira.py	Thu May 18 13:35:41 2017 -0400
+++ b/tools/mira3/mira.py	Wed Jun 07 12:33:07 2017 -0400
@@ -19,7 +19,7 @@
     # however there is some pipe error when doing that here.
     cmd = ["mira", "-v"]
     try:
-        child = subprocess.Popen(cmd,
+        child = subprocess.Popen(cmd, universal_newlines=True,
                                  stdout=subprocess.PIPE,
                                  stderr=subprocess.STDOUT)
     except Exception as err:
@@ -91,7 +91,7 @@
 handle = open(out_log, "w")
 try:
     # Run MIRA
-    child = subprocess.Popen(cmd_list,
+    child = subprocess.Popen(cmd_list, universal_newlines=True,
                              stdout=handle,
                              stderr=subprocess.STDOUT)
 except Exception as err:
diff -r 83a94a5038a7 -r ad14a345f1b0 tools/mira3/tool_dependencies.xml
--- a/tools/mira3/tool_dependencies.xml	Thu May 18 13:35:41 2017 -0400
+++ b/tools/mira3/tool_dependencies.xml	Wed Jun 07 12:33:07 2017 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="MIRA" version="3.4.1.1">
-        <repository changeset_revision="a50610140295" name="package_mira_3_4_1_1" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="aff5e2528b9d" name="package_mira_3_4_1_1" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>