Mercurial > repos > peterjc > effectivet3
changeset 33:8db22615d43f draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit e2fa1c599b6670b418479447fe5a181a97a6c834-dirty
| author | peterjc |
|---|---|
| date | Fri, 15 Sep 2017 10:23:15 -0400 |
| parents | 1129cafdf0ae |
| children | 011cfce866f1 |
| files | tools/effectiveT3/effectiveT3.xml tools/effectiveT3/tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/effectiveT3/effectiveT3.xml Wed Jun 07 10:51:31 2017 -0400 +++ b/tools/effectiveT3/effectiveT3.xml Fri Sep 15 10:23:15 2017 -0400 @@ -16,7 +16,7 @@ '$fasta_file' '$tabular_file' </command> <inputs> - <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> + <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> <param name="module" type="select" display="radio" label="Classification module"> <options from_file="effectiveT3.loc"> <column name="value" index="0"/> @@ -62,7 +62,7 @@ </test> </tests> <help> - + **What it does** This calls the command line Effective T3 v1.0.1 tool for prediction of bacterial effector proteins.
--- a/tools/effectiveT3/tool_dependencies.xml Wed Jun 07 10:51:31 2017 -0400 +++ b/tools/effectiveT3/tool_dependencies.xml Fri Sep 15 10:23:15 2017 -0400 @@ -11,7 +11,7 @@ <action type="make_directory">$INSTALL_DIR/module</action> <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_ANIMAL-1.0.1.jar --> <action type="download_file" sha256sum="3d9cd8e805387d2dfa855076b3d5f7f97334aa612288075111329fb036c94e34" target_filename="TTSS_ANIMAL-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_ANIMAL/TTSS_ANIMAL_1.0.1_src_all.jar</action> - <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action> + <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action> <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_PLANT-1.0.1.jar --> <action type="download_file" sha256sum="593f0052ace030c2fa16cf336f3916a21bc2addbaefdfa149b084b1425e42a13" target_filename="TTSS_PLANT-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_PLANT/TTSS_PLANT_1.0.1_src_all.jar</action> <action type="move_file"><source>TTSS_PLANT-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>