# HG changeset patch
# User peterjc
# Date 1505485395 14400
# Node ID 8db22615d43f00a1ed48c4286df45f25b409bb23
# Parent  1129cafdf0aeb20fe9a47ce75de186e23dd91576
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 commit e2fa1c599b6670b418479447fe5a181a97a6c834-dirty

diff -r 1129cafdf0ae -r 8db22615d43f tools/effectiveT3/effectiveT3.xml
--- a/tools/effectiveT3/effectiveT3.xml	Wed Jun 07 10:51:31 2017 -0400
+++ b/tools/effectiveT3/effectiveT3.xml	Fri Sep 15 10:23:15 2017 -0400
@@ -16,7 +16,7 @@
 '$fasta_file' '$tabular_file'
     </command>
     <inputs>
-        <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> 
+        <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/>
         <param name="module" type="select" display="radio" label="Classification module">
             <options from_file="effectiveT3.loc">
                 <column name="value" index="0"/>
@@ -62,7 +62,7 @@
         </test>
     </tests>
     <help>
-    
+
 **What it does**
 
 This calls the command line Effective T3 v1.0.1 tool for prediction of bacterial effector proteins.
diff -r 1129cafdf0ae -r 8db22615d43f tools/effectiveT3/tool_dependencies.xml
--- a/tools/effectiveT3/tool_dependencies.xml	Wed Jun 07 10:51:31 2017 -0400
+++ b/tools/effectiveT3/tool_dependencies.xml	Fri Sep 15 10:23:15 2017 -0400
@@ -11,7 +11,7 @@
                 <action type="make_directory">$INSTALL_DIR/module</action>
                 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_ANIMAL-1.0.1.jar -->
                 <action type="download_file" sha256sum="3d9cd8e805387d2dfa855076b3d5f7f97334aa612288075111329fb036c94e34" target_filename="TTSS_ANIMAL-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_ANIMAL/TTSS_ANIMAL_1.0.1_src_all.jar</action>
-                <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>        
+                <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
                 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_PLANT-1.0.1.jar -->
                 <action type="download_file" sha256sum="593f0052ace030c2fa16cf336f3916a21bc2addbaefdfa149b084b1425e42a13" target_filename="TTSS_PLANT-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_PLANT/TTSS_PLANT_1.0.1_src_all.jar</action>
                 <action type="move_file"><source>TTSS_PLANT-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>