Mercurial > repos > peterjc > coverage_stats
changeset 1:42cd0b8b350b draft
Uploaded v0.0.1a, fixed typo in output header
| author | peterjc |
|---|---|
| date | Fri, 21 Nov 2014 09:02:04 -0500 |
| parents | 44ead6365da6 |
| children | c41aac3e4572 |
| files | test-data/coverage_test.coverage_stats.tabular test-data/ex1.coverage_stats.tabular tools/coverage_stats/coverage_stats.py |
| diffstat | 3 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/test-data/coverage_test.coverage_stats.tabular Fri Nov 21 06:30:28 2014 -0500 +++ b/test-data/coverage_test.coverage_stats.tabular Fri Nov 21 09:02:04 2014 -0500 @@ -1,4 +1,4 @@ -#identiifer length mapped placed min_cov max_cov mean_cov +#identifer length mapped placed min_cov max_cov mean_cov ref 100 5 0 0 2 0.50 none 200 0 0 0 0 0.00 full 10 3 0 2 2 2.00
--- a/test-data/ex1.coverage_stats.tabular Fri Nov 21 06:30:28 2014 -0500 +++ b/test-data/ex1.coverage_stats.tabular Fri Nov 21 09:02:04 2014 -0500 @@ -1,4 +1,4 @@ -#identiifer length mapped placed min_cov max_cov mean_cov +#identifer length mapped placed min_cov max_cov mean_cov chr1 1575 1446 18 0 63 32.32 chr2 1584 1789 17 0 64 39.78 * 0 0 0 0 0 0.00
--- a/tools/coverage_stats/coverage_stats.py Fri Nov 21 06:30:28 2014 -0500 +++ b/tools/coverage_stats/coverage_stats.py Fri Nov 21 09:02:04 2014 -0500 @@ -139,7 +139,7 @@ # Parse and combine the output out_handle = open(tabular_filename, "w") -out_handle.write("#identiifer\tlength\tmapped\tplaced\tmin_cov\tmax_cov\tmean_cov\n") +out_handle.write("#identifer\tlength\tmapped\tplaced\tmin_cov\tmax_cov\tmean_cov\n") idxstats_handle = open(idxstats_filename) depth_handle = open(depth_filename)