# HG changeset patch # User peterjc # Date 1416578524 18000 # Node ID 42cd0b8b350bf50012d1340141efd67f640f563b # Parent 44ead6365da67366af81261586824dc213faeed3 Uploaded v0.0.1a, fixed typo in output header diff -r 44ead6365da6 -r 42cd0b8b350b test-data/coverage_test.coverage_stats.tabular --- a/test-data/coverage_test.coverage_stats.tabular Fri Nov 21 06:30:28 2014 -0500 +++ b/test-data/coverage_test.coverage_stats.tabular Fri Nov 21 09:02:04 2014 -0500 @@ -1,4 +1,4 @@ -#identiifer length mapped placed min_cov max_cov mean_cov +#identifer length mapped placed min_cov max_cov mean_cov ref 100 5 0 0 2 0.50 none 200 0 0 0 0 0.00 full 10 3 0 2 2 2.00 diff -r 44ead6365da6 -r 42cd0b8b350b test-data/ex1.coverage_stats.tabular --- a/test-data/ex1.coverage_stats.tabular Fri Nov 21 06:30:28 2014 -0500 +++ b/test-data/ex1.coverage_stats.tabular Fri Nov 21 09:02:04 2014 -0500 @@ -1,4 +1,4 @@ -#identiifer length mapped placed min_cov max_cov mean_cov +#identifer length mapped placed min_cov max_cov mean_cov chr1 1575 1446 18 0 63 32.32 chr2 1584 1789 17 0 64 39.78 * 0 0 0 0 0 0.00 diff -r 44ead6365da6 -r 42cd0b8b350b tools/coverage_stats/coverage_stats.py --- a/tools/coverage_stats/coverage_stats.py Fri Nov 21 06:30:28 2014 -0500 +++ b/tools/coverage_stats/coverage_stats.py Fri Nov 21 09:02:04 2014 -0500 @@ -139,7 +139,7 @@ # Parse and combine the output out_handle = open(tabular_filename, "w") -out_handle.write("#identiifer\tlength\tmapped\tplaced\tmin_cov\tmax_cov\tmean_cov\n") +out_handle.write("#identifer\tlength\tmapped\tplaced\tmin_cov\tmax_cov\tmean_cov\n") idxstats_handle = open(idxstats_filename) depth_handle = open(depth_filename)