Mercurial > repos > peterjc > blast_rbh
changeset 25:8b34c3e1d20b draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh commit 96d587fc6f6cab23c597e88a83daf7eecd0d4162-dirty
author | peterjc |
---|---|
date | Thu, 09 Feb 2017 11:21:58 -0500 |
parents | 986673e8d32c |
children | 1ffbedc428d1 |
files | tools/blast_rbh/blast_rbh.py |
diffstat | 1 files changed, 4 insertions(+), 1 deletions(-) [+] |
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--- a/tools/blast_rbh/blast_rbh.py Fri Feb 03 12:38:10 2017 -0500 +++ b/tools/blast_rbh/blast_rbh.py Thu Feb 09 11:21:58 2017 -0500 @@ -19,9 +19,10 @@ # [Not doing this right now as would break on older BLAST+] import os +import shutil import sys import tempfile -import shutil + from optparse import OptionParser @@ -30,6 +31,7 @@ if return_code: sys.exit("Error %i from: %s" % (return_code, cmd)) + if "--version" in sys.argv[1:]: # TODO - Capture version of BLAST+ binaries too? print "BLAST RBH v0.1.10" @@ -302,6 +304,7 @@ os.symlink(os.path.abspath(input_fasta), output_fasta) print("No perfect duplicates in file, %i unique entries" % unique) + # print("Starting...") check_duplicate_ids(fasta_a) if not self_comparison: